GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002802-TA|BGIBMGA002802-PA|undefined
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.28 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    29   0.65 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   3.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.1  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   8.1  

>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 135 KIASAAQRTM--KSIKRNLTKRYSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPE 192
           K+A+A QR +  K  KR    + SVA D      +  N     PT    T +  N E   
Sbjct: 7   KLAAAKQRLLEVKKKKRQAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDIS 66

Query: 193 IQNVYS 198
             NV S
Sbjct: 67  ASNVVS 72


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 129 GQYTLTKIASAAQRTMKSIKRNLTKRYSVAMDGK-SFTKSSQNGTYEAPTKTKKTPIYAN 187
           G+YT  ++    Q  M+ +  +L  +YS     K +  K++    YEA  +  +  I   
Sbjct: 303 GKYTQEEVDKLIQERMEKVAEDLHAQYSAKHTQKINAFKANYARKYEATIQELQNQIGTA 362

Query: 188 YEKPEIQNVYSNISFNDTKPVLNKAENPVKAEFQEELKYAVSEKRPNISD 237
              P+I    SN ++ + +  L KA+N      Q++L+ A+ E R ++SD
Sbjct: 363 PNAPKI----SNSNWEEERRAL-KADNQT---LQKQLEKAIQE-RQDMSD 403


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/59 (30%), Positives = 25/59 (42%)

Query: 12  TLQKLPLRRGFDETRVRLIDVLEQTCWLSIRTVLSQENFEIQDLIAYVECDSSDSSGHL 70
           T+   P R G      +L++VL+ T       VLS  NF +  L   +E       GHL
Sbjct: 744 TMVNGPTRCGKHVLVCKLLEVLQDTSPNDRTVVLSDSNFSMNTLFTLLEKARCFHQGHL 802


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 128 GGQYTLTKIASAAQRTMKSIKRNLTKRYSVAMDGKSFT-------KSSQNGTYEAPTKTK 180
           GG     K  SAA + + S K       SVA   K  T       +S  +    AP++  
Sbjct: 260 GGTSASAKSTSAADQAVASSKPIKKAWASVAKSKKKVTPAPAPAPESEPSKPSIAPSQPS 319

Query: 181 KTPIYANYEKP 191
           KT + A YEKP
Sbjct: 320 KTNVSAAYEKP 330


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 187 NYEKPEIQNVYSNISFNDTKPVLNKAENPVK 217
           NY+ PE+ ++ SN  F  T P L  +E P K
Sbjct: 156 NYKAPEMGSLPSNTEFTST-PTLGVSEFPSK 185


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,645
Number of Sequences: 5004
Number of extensions: 48705
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 5
length of query: 316
length of database: 2,362,478
effective HSP length: 73
effective length of query: 243
effective length of database: 1,997,186
effective search space: 485316198
effective search space used: 485316198
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)