GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002802-TA|BGIBMGA002802-PA|undefined
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885...    31   1.2  
05_03_0024 - 7459352-7459765                                           31   1.6  
04_04_0208 - 23605701-23607149                                         29   3.7  

>01_04_0107 +
          16086724-16086799,16088007-16088288,16088523-16088585,
          16088684-16089045
          Length = 260

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 23 DETRVRLIDVLEQTCWLSIRTVLSQENFEIQDLIAYVECDSSDSSGHLYESLEPAPSQPP 82
          +E R  L  ++E T ++   T+L  E+   +  +A  E  +S S   + ESL P P +P 
Sbjct: 25 EEGRDLLDHIIENTSFVHCETILEIEDTHEEPSMAESENTTSTSHVSIVESL-PEPQEPK 83

Query: 83 RAPVVPIE 90
             + P+E
Sbjct: 84 VEKIQPLE 91


>05_03_0024 - 7459352-7459765
          Length = 137

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 275 SRFRRATSLAVDINDVPSALKITNSTFYLTDSMDGDSGF 313
           SR+  A++L +DI  V SAL++ +S F LT++   ++ F
Sbjct: 92  SRYATASALRLDIASVVSALRLGSSKFSLTETEKTETEF 130


>04_04_0208 - 23605701-23607149
          Length = 482

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 75  EPAPS-QPPRAPVVPIEE 91
           EP PS QPP APVVP+ E
Sbjct: 209 EPGPSEQPPEAPVVPLPE 226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,576,701
Number of Sequences: 37544
Number of extensions: 261249
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 3
length of query: 316
length of database: 14,793,348
effective HSP length: 82
effective length of query: 234
effective length of database: 11,714,740
effective search space: 2741249160
effective search space used: 2741249160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)