GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002802-TA|BGIBMGA002802-PA|undefined
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)             34   0.17 
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   5.0  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  29   5.0  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   8.7  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   8.7  

>SB_11398| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.82)
          Length = 439

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 162 KSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVK 217
           K   KSS + +   PTK  K P ++++ KPE Q+  S     D  P +  A +P+K
Sbjct: 259 KKSRKSSSSSSKGDPTKPSKKPSFSSFSKPENQD--SLTKDEDDNPFVGIAPSPLK 312


>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 139 AAQRTMKSIKRNLTKRYSVA-MDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVY 197
           AA    + I +  T    V+  D +   KSSQN T E PTKTK+T    +   P I+  +
Sbjct: 897 AASSLRREISKRFTSETDVSDKDERRVAKSSQN-TREKPTKTKRTKKIIHNSGPSIKTFF 955

Query: 198 SN 199
           ++
Sbjct: 956 TS 957


>SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 33  LEQTCWLSIRTVLSQENFEIQDLIAYVECDSSDSSG-HLYESLEPAPSQ 80
           +E   W S   + +Q +  I    AY+ C+ S S G H  E   P PSQ
Sbjct: 599 VESKVWNSKENLGAQPHAHIDMRAAYLGCEDSVSGGAHFRERPRPRPSQ 647


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 157 VAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKP 207
           ++ DG +   SS +GT  AP    KTP   N     +Q+  S +S  +T P
Sbjct: 827 MSTDGTTTAASSTDGTTAAPFIRVKTPSQLNGTVSPLQSSPSTVSSVETTP 877


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 148 KRNLTKRYSVAMDGKSFTKSSQN-----GTYEAPTKTKKTPIYANYEKPEIQNVYSN 199
           KR+LT    +A+ G   T+SS       GT  A +  +   I    EKP  Q  YS+
Sbjct: 255 KRSLTVERPIAIQGTVSTRSSMGPIAIQGTVSARSSMRPIAIQGTQEKPNPQRQYSS 311


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 148 KRNLTKRYSVAMDGKSFTKSSQN-----GTYEAPTKTKKTPIYANYEKPEIQNVYSN 199
           KR+LT    +A+ G   T+SS       GT  A +  +   I    EKP  Q  YS+
Sbjct: 394 KRSLTVERPIAIQGTVSTRSSMGPIAIQGTVSARSSMRPIAIQGTQEKPNPQRQYSS 450


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 162 KSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVK 217
           K   K S+ G      K +   I +  E+PE +  YS+IS + +  V+ KA++  K
Sbjct: 27  KKSKKKSRQGNSTEKLKEQYEDISSASEEPEPERKYSSISRSPSPTVVKKAKSNEK 82


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 198 SNISFNDTKPVLNKAENPVKAEFQEELKYAVSEKRPN 234
           +NI+F + K + N+ E   K   QEEL+ A+  KR N
Sbjct: 686 NNINFEEYKRLRNELEILKKKRAQEELQEAMMMKRKN 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,504
Number of Sequences: 59808
Number of extensions: 329124
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 22
length of query: 316
length of database: 16,821,457
effective HSP length: 82
effective length of query: 234
effective length of database: 11,917,201
effective search space: 2788625034
effective search space used: 2788625034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)