GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002802-TA|BGIBMGA002802-PA|undefined
         (316 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014987-1|AAH14987.1|  771|Homo sapiens UTP14, U3 small nucleol...    33   1.7  
BC009649-1|AAH09649.1|  771|Homo sapiens UTP14, U3 small nucleol...    33   1.7  
BC001149-1|AAH01149.1|  771|Homo sapiens UTP14, U3 small nucleol...    33   1.7  
AL034405-5|CAI42908.1|  771|Homo sapiens UTP14, U3 small nucleol...    33   1.7  
X68302-1|CAA48374.1|  858|Homo sapiens h-DRK1 K(+) channel protein.    32   3.0  
L02840-1|AAA36156.1|  854|Homo sapiens voltage-gated potassium c...    32   3.0  
BC110573-1|AAI10574.1|  813|Homo sapiens KCNB1 protein protein.        32   3.0  
BC110572-1|AAI10573.1|  813|Homo sapiens KCNB1 protein protein.        32   3.0  
AL035685-1|CAB89417.1|  858|Homo sapiens potassium voltage-gated...    32   3.0  
AF026005-1|AAB88808.1|  858|Homo sapiens delayed rectifier potas...    32   3.0  

>BC014987-1|AAH14987.1|  771|Homo sapiens UTP14, U3 small nucleolar
           ribonucleoprotein, homolog A (yeast) protein.
          Length = 771

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 178 KTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPV-KAEFQEELKYAVSEKRPNIS 236
           K+KKT +     K EI+ ++  ++FN T  VL+K +  V K    E+L + + ++ P I+
Sbjct: 111 KSKKT-VELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIA 169

Query: 237 DV 238
            +
Sbjct: 170 PI 171


>BC009649-1|AAH09649.1|  771|Homo sapiens UTP14, U3 small nucleolar
           ribonucleoprotein, homolog A (yeast) protein.
          Length = 771

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 178 KTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPV-KAEFQEELKYAVSEKRPNIS 236
           K+KKT +     K EI+ ++  ++FN T  VL+K +  V K    E+L + + ++ P I+
Sbjct: 111 KSKKT-VELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIA 169

Query: 237 DV 238
            +
Sbjct: 170 PI 171


>BC001149-1|AAH01149.1|  771|Homo sapiens UTP14, U3 small nucleolar
           ribonucleoprotein, homolog A (yeast) protein.
          Length = 771

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 178 KTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPV-KAEFQEELKYAVSEKRPNIS 236
           K+KKT +     K EI+ ++  ++FN T  VL+K +  V K    E+L + + ++ P I+
Sbjct: 111 KSKKT-VELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIA 169

Query: 237 DV 238
            +
Sbjct: 170 PI 171


>AL034405-5|CAI42908.1|  771|Homo sapiens UTP14, U3 small nucleolar
           ribonucleoprotein, homolog A (yeast) protein.
          Length = 771

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 178 KTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPV-KAEFQEELKYAVSEKRPNIS 236
           K+KKT +     K EI+ ++  ++FN T  VL+K +  V K    E+L + + ++ P I+
Sbjct: 111 KSKKT-VELPLNKEEIERIHREVAFNKTAQVLSKWDPVVLKNRQAEQLVFPLEKEEPAIA 169

Query: 237 DV 238
            +
Sbjct: 170 PI 171


>X68302-1|CAA48374.1|  858|Homo sapiens h-DRK1 K(+) channel protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 491 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 546

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 547 TKESAAQSKPKEELE 561


>L02840-1|AAA36156.1|  854|Homo sapiens voltage-gated potassium
           channel protein.
          Length = 854

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 487 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 542

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 543 TKESAAQSKPKEELE 557


>BC110573-1|AAI10574.1|  813|Homo sapiens KCNB1 protein protein.
          Length = 813

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 446 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 501

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 502 TKESAAQSKPKEELE 516


>BC110572-1|AAI10573.1|  813|Homo sapiens KCNB1 protein protein.
          Length = 813

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 446 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 501

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 502 TKESAAQSKPKEELE 516


>AL035685-1|CAB89417.1|  858|Homo sapiens potassium voltage-gated
           channel, Shab-related subfamily, member 1 protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 491 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 546

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 547 TKESAAQSKPKEELE 561


>AF026005-1|AAB88808.1|  858|Homo sapiens delayed rectifier
           potassium channel Kv2.1 protein.
          Length = 858

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 152 TKR-YSVAMDGKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLN 210
           TKR  S     KSF    Q    +A  ++  +P + N +  +++++Y+ ++   ++P+LN
Sbjct: 491 TKRTLSETSSSKSFETKEQGSPEKA--RSSSSPQHLNVQ--QLEDMYNKMAKTQSQPILN 546

Query: 211 KAENPVKAEFQEELK 225
             E+  +++ +EEL+
Sbjct: 547 TKESAAQSKPKEELE 561


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,085,619
Number of Sequences: 224733
Number of extensions: 1337181
Number of successful extensions: 3063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3057
Number of HSP's gapped (non-prelim): 10
length of query: 316
length of database: 73,234,838
effective HSP length: 90
effective length of query: 226
effective length of database: 53,008,868
effective search space: 11980004168
effective search space used: 11980004168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)