GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002802-TA|BGIBMGA002802-PA|undefined
         (316 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical ...    33   0.35 
AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical...    29   3.3  
AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    29   3.3  
Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    29   5.7  
AL117202-20|CAB57898.3| 1261|Caenorhabditis elegans Hypothetical...    28   7.6  

>AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical
           protein Y39E4B.6 protein.
          Length = 237

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 173 YEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVKAEFQEELKYAVSEKR 232
           Y    KTK  P   N ++P+ Q+ +     N T+ +L   E    AEF+ E K+  +E+R
Sbjct: 45  YSDDEKTK--PTKKNQKRPDKQDRFGMAPPNSTQFLLEDREARADAEFENEQKFEAAERR 102


>AC024859-17|AAN84887.1|  105|Caenorhabditis elegans Hypothetical
          protein Y71H2AM.20b protein.
          Length = 105

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 63 SSDSSGHLYESLEPAPSQPPRAPVVPIE 90
          S D S H  ES+E APSQ P  P  P +
Sbjct: 23 SFDRSEHPRESMEDAPSQDPMPPRAPAQ 50


>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 63  SSDSSGHLYESLEPAPSQPPRAPVVPIE 90
           S D S H  ES+E APSQ P  P  P +
Sbjct: 300 SFDRSEHPRESMEDAPSQDPMPPRAPAQ 327


>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 161 GKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVKAEF 220
           G+   K   N +YE P+   + P+  +  K     VY  +    +   +N+AEN +++E 
Sbjct: 829 GEFLVKFCFNRSYECPSSNCEVPMLDHSRKL----VYGKVCVEISTQTVNEAENAIESEQ 884

Query: 221 QEEL 224
           Q+ +
Sbjct: 885 QKSI 888


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/48 (22%), Positives = 28/48 (58%)

Query: 130 QYTLTKIASAAQRTMKSIKRNLTKRYSVAMDGKSFTKSSQNGTYEAPT 177
           Q +L+K A++ +R++K +   + +R+     G+S  + +++ +   PT
Sbjct: 40  QSSLSKRANSTRRSLKELSEGVQQRFQPITHGRSLQRITEDDSPSTPT 87


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 161 GKSFTKSSQNGTYEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVKAEF 220
           G+   K   N +YE P+   + P+  +  K     VY  +    +   +N+AEN +++E 
Sbjct: 829 GEFLVKFCFNRSYECPSSNCEVPMLDHSRKL----VYGKVCVEISTQTVNEAENAIESEQ 884

Query: 221 QEEL 224
           Q+ +
Sbjct: 885 QKSI 888


>AL117202-20|CAB57898.3| 1261|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1261

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 173 YEAPTKTKKTPIYANYEKPEIQNVYSNISFNDTKPVLNKAENPVKAEFQE 222
           Y+   KTK++  Y  Y+    + +      ++ K  LN+ +N VK++  +
Sbjct: 214 YQKLDKTKRSVEYTMYDNTNKEAIKEKTKLDEQKVELNQKDNNVKSQLND 263


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,820,764
Number of Sequences: 27539
Number of extensions: 255854
Number of successful extensions: 602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 7
length of query: 316
length of database: 12,573,161
effective HSP length: 81
effective length of query: 235
effective length of database: 10,342,502
effective search space: 2430487970
effective search space used: 2430487970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)