Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002801-TA|BGIBMGA002801-PA|undefined
         (100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   2.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   2.9  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    23   8.9  

>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 63  GNASADSESEHPTNSAAAECSYLSDVSVHSV 93
           GN ++ +ES+  ++S  AE   ++D +VH +
Sbjct: 307 GNGNSTTESQGESSSQQAESHGVADDTVHKI 337


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 73 HPTNSAAAECSYLSDVSVHSVFC 95
          H + SA  +C Y S +   S FC
Sbjct: 56 HDSRSALLKCGYASSIDPKSQFC 78


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/20 (45%), Positives = 17/20 (85%)

Query: 64  NASADSESEHPTNSAAAECS 83
           +ASA++ES + ++S++ ECS
Sbjct: 118 SASAENESINSSSSSSKECS 137


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.130    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,704
Number of Sequences: 5004
Number of extensions: 13644
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 2,362,478
effective HSP length: 63
effective length of query: 37
effective length of database: 2,047,226
effective search space: 75747362
effective search space used: 75747362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)