GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002801-TA|BGIBMGA002801-PA|undefined
         (100 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3C1J1 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_UPI0000F1F103 Cluster: PREDICTED: hypothetical protein;...    31   3.4  
UniRef50_Q4Q0P1 Cluster: Putative uncharacterized protein; n=3; ...    31   4.6  
UniRef50_A1UPV4 Cluster: Putative uncharacterized protein precur...    30   8.0  
UniRef50_Q7RU41 Cluster: Putative uncharacterized protein B13N20...    30   8.0  
UniRef50_A5DAD0 Cluster: PAB-dependent poly(A)-specific ribonucl...    30   8.0  

>UniRef50_A3C1J1 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 331

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/70 (32%), Positives = 27/70 (38%)

Query: 11  RGVSRKWRFWYTHVLATVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSE 70
           R V R+W    T     +AHR R A  R R   L  F    A   G  T     +  D +
Sbjct: 46  RAVCRQWNAALTSDHFILAHRARAAAARHRHPELLFFAPGAAFAGGRATSFYACSLRDGD 105

Query: 71  SEHPTNSAAA 80
            E P   AAA
Sbjct: 106 CEAPPPPAAA 115


>UniRef50_UPI0000F1F103 Cluster: PREDICTED: hypothetical protein; n=1;
            Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
            rerio
          Length = 1993

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 32   KRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAECSYLSDVSVH 91
            +R   +  R +W ++   +  LR     D C + SA    ++  NS AA CS LS   V+
Sbjct: 1864 RRSLADIQRPQWPSVSDSQATLRG----DSCASRSAFESVKYQQNSTAAHCSMLSQQQVN 1919

Query: 92   SVFCAM 97
                AM
Sbjct: 1920 QFSLAM 1925


>UniRef50_Q4Q0P1 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1535

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 45  ALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAECSYLSDVSVHSVFCAM 97
           A +  E+        D C  A A +ES+ P    A  CS +S V  H   CA+
Sbjct: 289 ATYAGEIVEWEAEEQDDCARA-AGTESQQPRGPCARSCSVVSRVQAHPSGCAI 340


>UniRef50_A1UPV4 Cluster: Putative uncharacterized protein
           precursor; n=3; Mycobacterium|Rep: Putative
           uncharacterized protein precursor - Mycobacterium sp.
           (strain KMS)
          Length = 197

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 27  TVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGN-ASADSESEHPTNSAAAECSYL 85
           +++ R+   +E  R  WLAL+G   A  + +H + CG  +SAD  +      AAA   YL
Sbjct: 78  SISSRQASEIEMMRG-WLALWGVGPAAAQQHHPNQCGMVSSADLTALQNAGDAAANRLYL 136

Query: 86  SDVSVH 91
             +  H
Sbjct: 137 ELMIAH 142


>UniRef50_Q7RU41 Cluster: Putative uncharacterized protein
           B13N20.300; n=2; Neurospora crassa|Rep: Putative
           uncharacterized protein B13N20.300 - Neurospora crassa
          Length = 802

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 10  KRGVS-RKWRFWYTHVLATVAHRKRPALERDRSRWLALFGRELA 52
           +RG S ++++FW T        R+ P LE  R  WL L  RE+A
Sbjct: 747 RRGTSWQRFKFWRTRDAGFRLRRREPLLE--RREWLGLKRREMA 788


>UniRef50_A5DAD0 Cluster: PAB-dependent poly(A)-specific
           ribonuclease subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent
           poly(A)-nuclease); n=2; Pichia guilliermondii|Rep:
           PAB-dependent poly(A)-specific ribonuclease subunit PAN2
           (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease) -
           Pichia guilliermondii (Yeast) (Candida guilliermondii)
          Length = 1098

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 55  RGNHTDVCGNASADSESEHPTNSAAAECSYLSDVSVHSV 93
           +GN+   CG  SA    +H  +SAA   SY++D  VH +
Sbjct: 204 QGNYIATCGY-SARRRYDHKNSSAAGGTSYITDPLVHLI 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.322    0.130    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,539,528
Number of Sequences: 1657284
Number of extensions: 3558385
Number of successful extensions: 11204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11203
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 575,637,011
effective HSP length: 77
effective length of query: 23
effective length of database: 448,026,143
effective search space: 10304601289
effective search space used: 10304601289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 65 (30.3 bits)