GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002801-TA|BGIBMGA002801-PA|undefined
         (100 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   0.80 
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    20   5.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   7.5  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    19   7.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   7.5  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    19   9.9  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 0.80
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 8   VAKRGVSRKWRFWYTHVLATVAHRKRPALERDRSRWLALFGRELALRRGNHTD 60
           +A+ G+    R  Y  ++  +   +    + DR   L    R+L+ R G+ TD
Sbjct: 157 IARSGIWENCRAAYEDIVKHLERLREERCDPDRPLPLDQKARDLSPRNGSPTD 209


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 28  VAHRKRPALERDRSRWLALFGRELALRRGNHT 59
           ++H  +  L +  S W A    ++ +  GNHT
Sbjct: 127 ISHLDKLQLGQYFSPWFAEHMGQIKVASGNHT 158


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)

Query: 36  LER--DRSRWLALFGR 49
           LER  +R  W+A FGR
Sbjct: 235 LERHLERKAWVASFGR 250


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 57  NHTDVCGNASADSESEHPTNSAAAE 81
           N TDV G    D + E+P     A+
Sbjct: 128 NFTDVWGFDGFDLDWEYPCQRGGAD 152


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.4 bits (38), Expect = 7.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 64  NASADSESEHPTNSAAAECSYLSDVSV 90
           ++S+DSE E P      +    S++++
Sbjct: 99  DSSSDSEDERPRPGGGTKYQTFSNLNI 125


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 75  TNSAAAECSYLSDVSVHSVFC 95
           TN+A  + SY+  + V+   C
Sbjct: 117 TNAALPKISYVKSIDVYLGTC 137


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.130    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707
Number of Sequences: 317
Number of extensions: 659
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 114,650
effective HSP length: 48
effective length of query: 52
effective length of database: 99,434
effective search space:  5170568
effective search space used:  5170568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.2 bits)
S2: 37 (19.0 bits)