Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002801-TA|BGIBMGA002801-PA|undefined
(100 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0294 + 22089915-22091333 33 0.051
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528... 30 0.27
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 28 1.1
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 28 1.1
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 27 3.3
12_02_0581 - 20785198-20785962,20786107-20786649 26 4.4
01_05_0032 + 17380349-17381088,17382720-17382746,17382870-173830... 26 4.4
03_05_0390 - 23738892-23739392 26 5.8
12_02_0916 - 24271151-24271894 25 7.7
04_04_0386 + 24865344-24865973,24866068-24866439 25 7.7
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 25 7.7
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 25 7.7
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 25 7.7
>09_06_0294 + 22089915-22091333
Length = 472
Score = 32.7 bits (71), Expect = 0.051
Identities = 23/70 (32%), Positives = 27/70 (38%)
Query: 11 RGVSRKWRFWYTHVLATVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSE 70
R V R+W T +AHR R A R R L F A G T + D +
Sbjct: 46 RAVCRQWNAALTSDHFILAHRARAAAARHRHPELLFFAPGAAFAGGRATSFYACSLRDGD 105
Query: 71 SEHPTNSAAA 80
E P AAA
Sbjct: 106 CEAPPPPAAA 115
>08_02_1627 -
28348225-28348725,28349061-28349114,28352613-28352810,
28352856-28353380
Length = 425
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 15 RKWRFWYT--HV-LATVAHRKRPALERDRSRWLALFGRELALR 54
R W+ W+ H TVA R+ A + R+R LALFGR+ +R
Sbjct: 118 RAWQTWHHSGHCPRGTVAVRRTAAADVQRARSLALFGRKKQMR 160
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 32 KRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSESEHPT-NSAAAE 81
K PA+ D S A G EL R GN TDV ESE+ N ++A+
Sbjct: 416 KLPAVSEDDS---ACRGLELEFRCGNETDVSQKEDKQVESEYKAENDSSAQ 463
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 23 HVLATVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAEC 82
H T R+ L+ ++W+AL L+ N+T + A++ES+ T +
Sbjct: 136 HETVTKKSRQNAKLQLTEAKWMALLDGILSFLSSNNTKSNEDHGANTESQCDTKRSINGF 195
Query: 83 SY-LSDVSV 90
+Y + DVS+
Sbjct: 196 AYNMMDVSL 204
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 52 ALRRGNHTDVCGNASADSESEH 73
AL+ HTD+ GNAS D+ H
Sbjct: 1329 ALKAAGHTDLSGNASKDAMLMH 1350
>12_02_0581 - 20785198-20785962,20786107-20786649
Length = 435
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 59 TDVCGNASADSESEHPTNSAAAECSYLSDVSVHSVFCAMKL 99
TD ADS S N +C+ SDV V +V CA KL
Sbjct: 352 TDAGMRLLADSPSL--VNLTLRQCNGFSDVGVGAVVCARKL 390
>01_05_0032 +
17380349-17381088,17382720-17382746,17382870-17383038,
17383259-17383327,17385364-17385699
Length = 446
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 12 GVSRKWRFWYTHVLATVAHRKRPALERDRSRW 43
G ++W YTH+L A+ K + R R+ W
Sbjct: 402 GALQQWPTKYTHLLQLKANDKYEEIVRGRTTW 433
>03_05_0390 - 23738892-23739392
Length = 166
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 15 RKWRFWYTHVL---ATVAHRKR--PALERDRSRWLALFGRELALRRGNHTDVCGNASAD 68
R WR W + +A R+R A RD + W GR + + + G A D
Sbjct: 17 RTWRRWREEAMRRRGLMASRQRRVEARRRDATHWRRGRGRRTVMEGAHKAPIAGEADGD 75
>12_02_0916 - 24271151-24271894
Length = 247
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 29 AHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSES-EH 73
+ R+RP L +LAL LA R + DV +ASA + + EH
Sbjct: 46 SRRRRPQLPPSEEEYLALCLLMLARGRRDGDDVAASASAAAAAVEH 91
>04_04_0386 + 24865344-24865973,24866068-24866439
Length = 333
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 27 TVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAECSYL 85
T+ + R A R R F + + G D +A AD E E +SAAA + L
Sbjct: 258 TIRYASRKAYAETRPRIKGRFAKRT--KGGAGADADADADADGEDEEMYSSAAAAVAAL 314
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 1 MSGFDRLVAKRGVSRKWRFWYTHVLATVAHRKRPALERDRSRWLALFGRELALRRGN 57
M FDR K + K T + + P E +RS+W + R++ + +GN
Sbjct: 287 MQDFDRGTDKNKETSKATKHLTKLFPNKVTIQPPKDEIERSKWNQMLDRDVEILKGN 343
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 50 ELALRRGNH--TDVCGNASADSESEHPTNSAAAECS 83
E AL GN+ + G+ A + H T S+++ECS
Sbjct: 97 EAALHYGNYYKPSLAGSYRARAPGPHATTSSSSECS 132
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 47 FGRELALRRGNHTDVCG 63
FGR+L LR GN+ D CG
Sbjct: 326 FGRKLCLRAGNN-DACG 341
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.130 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,801
Number of Sequences: 37544
Number of extensions: 106061
Number of successful extensions: 355
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 13
length of query: 100
length of database: 14,793,348
effective HSP length: 71
effective length of query: 29
effective length of database: 12,127,724
effective search space: 351703996
effective search space used: 351703996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -