GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002801-TA|BGIBMGA002801-PA|undefined
         (100 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    28   0.99 
U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical pr...    26   4.0  
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    26   4.0  
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    26   4.0  
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    26   4.0  
AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical ...    26   4.0  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    25   9.3  

>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 4   FDRLVAKRGVSRKWRFWYTHVLA 26
           FDR V K G  + WRFW    LA
Sbjct: 910 FDRYV-KEGAKKNWRFWVVSYLA 931


>U41510-6|AAK39382.1|  454|Caenorhabditis elegans Hypothetical
           protein ZC449.1 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 59  TDVCGNASADSESEHPTNSAAAECSY 84
           + +   +S++SES  P+N   +EC Y
Sbjct: 407 SSILDTSSSESESSSPSNGGWSECDY 432


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 4   FDRLVAKRGVSRKWRFW 20
           FDR V K G  + WRFW
Sbjct: 910 FDRYV-KEGAKKNWRFW 925


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 4   FDRLVAKRGVSRKWRFW 20
           FDR V K G  + WRFW
Sbjct: 910 FDRYV-KEGAKKNWRFW 925


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 4   FDRLVAKRGVSRKWRFW 20
           FDR V K G  + WRFW
Sbjct: 814 FDRYV-KEGAKKSWRFW 829


>AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical
           protein R02F11.4 protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 25  LATVAHRKRPALERDRSRWLALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAEC 82
           L T+  +K     +    WLAL G    +  GNH  +C   ++      P   A   C
Sbjct: 271 LHTIDGQKIEDQVQTEGEWLALQGSIKKIGPGNHDALCQQIASHFPDSGPPTPAQKSC 328


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 42  RWLALFGRELALRRGNHTDVCGNASADSESEHPTNSAAAEC 82
           +W  L+ + +A    N + VC N S  ++S   ++  +A C
Sbjct: 109 KWNQLYDQYIATTSSNGSIVCWNISRRNKSVFKSHERSATC 149


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.130    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,525
Number of Sequences: 27539
Number of extensions: 78286
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 7
length of query: 100
length of database: 12,573,161
effective HSP length: 70
effective length of query: 30
effective length of database: 10,645,431
effective search space: 319362930
effective search space used: 319362930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)