GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002800-TA|BGIBMGA002800-PA|undefined
         (774 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   1.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   4.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   4.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   6.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   7.9  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 124 VKSKETPNEATHAGSHVKRKIDPNQRKVSFKIKT 157
           VK        T AG H+++  DP++RK ++  +T
Sbjct: 335 VKLANPQKLTTAAGKHLRKVGDPSKRKGTYAFRT 368


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 390 KIKTIRPISNSNETPRKTQAANPDSTLVPKKKELIYDR 427
           K K + P ++ NE     Q+ + +++  PK  + +Y++
Sbjct: 145 KNKVVTPKTSPNEASMSPQSTSSNNSASPKACQFLYNQ 182


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 390 KIKTIRPISNSNETPRKTQAANPDSTLVPKKKELIYDR 427
           K K + P ++ NE     Q+ + +++  PK  + +Y++
Sbjct: 165 KNKVVTPKTSPNEASMSPQSTSSNNSASPKACQFLYNQ 202


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 276 SDGIKAPKYQSSKKKLKYHDSNEHQNG 302
           S G+  P+Y   K+K     S++ +NG
Sbjct: 107 SPGVNVPEYPWMKEKKTTRKSSQQENG 133


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 231 IKIVVRQKRGSKKRNHRKRCSSMDSIDKL 259
           IKI  + +R  +++ ++KR      ID L
Sbjct: 201 IKIWFQNRRAKERKQNKKRIEEKSQIDNL 229


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,812
Number of Sequences: 317
Number of extensions: 6347
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 774
length of database: 114,650
effective HSP length: 62
effective length of query: 712
effective length of database: 94,996
effective search space: 67637152
effective search space used: 67637152
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)