Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002800-TA|BGIBMGA002800-PA|undefined
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 33 0.65
04_03_0263 - 13605195-13607366,13607535-13607702 32 1.5
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 31 3.5
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 31 3.5
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 31 4.6
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 31 4.6
10_04_0021 - 7647799-7648386,7648504-7648527 30 8.0
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 33.5 bits (73), Expect = 0.65
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 84 PTKPDKRIEPTVHYAQLDIITKSEDTRSTGGGHDLKTSSDVKSKETPNEATHAGSHVKRK 143
P KP P+ H +KS+ R +GGG D K S SK+ E+ S K +
Sbjct: 390 PAKPT----PSGHARGTPPASKSKQKRKSGGGDDSKASGGAASKKAKVESDTKPSVAKDE 445
Query: 144 IDPNQRKVSFKIKTAGTFHRRPPIA---AKTVTVATSNVS--ELTHKF-NLLNQPHSSPK 197
+ + S + T P+ +TV +A + V+ +L +F + L P
Sbjct: 446 TPSSSKPASKATAASKTSANVSPVTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNA 505
Query: 198 HSKLAKTIEGLQ 209
+++ K I +Q
Sbjct: 506 FAEILKKISKIQ 517
>04_03_0263 - 13605195-13607366,13607535-13607702
Length = 779
Score = 32.3 bits (70), Expect = 1.5
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 14 DDAKQHGTVKALLRNFRVTEKEMAIKENQNDTNKCVYSVPITPAIQTARTKSISEAKKAF 73
DD KQ A L+N K +A + QND+N SV ++Q+ + + ++ A+
Sbjct: 341 DDCKQ-----ACLKNCSC--KAVAFRYGQNDSNGECRSVTEVFSLQSIQPEKVNYNSSAY 393
Query: 74 LNATVSPNAPPTKPDKRIEPTVHYAQLDIIT 104
L ++P++ PT+ K+++ T+ A L IT
Sbjct: 394 LKVQITPSSDPTQ--KKLK-TILGATLAAIT 421
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 31.1 bits (67), Expect = 3.5
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 242 KKRNHRKRCSSMDSIDKLIITDKESTKIQVIR--SKSDGIKAPKYQSSKKKLKYHDSNEH 299
K R RC D + + D +S + R +K GI PK + +K+ L+Y S+
Sbjct: 125 KVSERRDRCRVDDIAARPTVVDVDSRLEAMYRKATKLIGISKPKNELTKQLLEYDGSSSQ 184
Query: 300 QNGSDSV---DGLAAKSVINEPEKDIKATGNNVKSVIKKFECEIN 341
Q+ S+ GL ++ N +++KA ++ V +IN
Sbjct: 185 QSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDIN 229
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 31.1 bits (67), Expect = 3.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 665 HGDGSLSHCYESIPNSPSMVKL-----RNNLKKQLASAVQKRLSFDTVSNISQSTLSSEQ 719
HG + HC E + +S S V L N L QL + KR + V+++++S S+ +
Sbjct: 557 HGHADMVHCRERLSDSESKVFLAFFLETNTLCHQLQAEAFKRSTERLVNDLTRSARSARE 616
Query: 720 KTNSI 724
K +I
Sbjct: 617 KLEAI 621
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 30.7 bits (66), Expect = 4.6
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 254 DSIDKLIITDKESTKIQVIRSKSDGIKAPKYQSSKKKLKYHDSNEHQNGSDSVDGLAAKS 313
D D I+ ++ S + R ++ + PK +S L S + GSD + +
Sbjct: 1514 DDEDDEIVPEEISRNPVMGRDRNHALVLPKPESRASVLPLQVSLDESEGSDQENDNKGQE 1573
Query: 314 VINEPEKDIKATGNNVKSVIKK-FECEINA 342
+ N E D K + +K +K E EI+A
Sbjct: 1574 IANGTEVDDKKSNKRLKEKARKQRELEISA 1603
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 30.7 bits (66), Expect = 4.6
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 39 KENQNDTNKCVYSVPITPAIQ-TARTKSISEAKKAFLNAT-VSPNAPPT 85
++NQN+T+ C +P TP + TA K+ S K+ +N T S APPT
Sbjct: 407 QKNQNNTDVC-SQLPKTPQTKSTAEHKTKSNITKSNINNTSTSKGAPPT 454
>10_04_0021 - 7647799-7648386,7648504-7648527
Length = 203
Score = 29.9 bits (64), Expect = 8.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 262 TDKESTKIQVIRSKSDGIKAPKYQSSKKKLKYHDSNEHQNGSDSVDGLAAKSVINEPEKD 321
+D ES+ + ++K D KA + K + DS E +N D +D ++IN+
Sbjct: 26 SDSESSTSKDGKAKGD--KAKDDEPGDDKSEGEDSQEIKNLQDQIDYAVHHALINQSGVL 83
Query: 322 IKATGNNVKSVI 333
+ N +KSV+
Sbjct: 84 VNTLTNMIKSVV 95
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.126 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,668
Number of Sequences: 37544
Number of extensions: 744728
Number of successful extensions: 1681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1677
Number of HSP's gapped (non-prelim): 8
length of query: 774
length of database: 14,793,348
effective HSP length: 88
effective length of query: 686
effective length of database: 11,489,476
effective search space: 7881780536
effective search space used: 7881780536
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -