GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002800-TA|BGIBMGA002800-PA|undefined
         (774 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   1.9  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    27   2.5  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 278 GIKAPKYQSSKKKLKYHDSNEHQNGSDSVDGLAAKSVINEPEKDIKATGNN 328
           G +A K +S K  +  H+S +H N +    G+  K +++  +       N+
Sbjct: 119 GYRAQKIRSKKLSVLMHNSAKHPNTNSCTVGVHFKQIVDREDGSFDEVPNS 169


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 273 RSKSDGIKAPKYQSSKKKLKYHDSNEHQNGSDSVDGLAAKSVIN 316
           ++K+D  K   +  + K+ + +      NGSD VDG +  S IN
Sbjct: 654 QNKTDAEKILSHVHALKQAEGYIDMSCANGSDQVDGSSGASAIN 697


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,849
Number of Sequences: 2123
Number of extensions: 25567
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 3
length of query: 774
length of database: 516,269
effective HSP length: 69
effective length of query: 705
effective length of database: 369,782
effective search space: 260696310
effective search space used: 260696310
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)