GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002800-TA|BGIBMGA002800-PA|undefined
         (774 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.25 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   7.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 235 VRQKRGSKKRNHRKRCSSMDSIDKLIITDKE-------STKIQVIRSKSDGIKAPKYQSS 287
           VR   G  +++H  +C  +  ++K +++          STK  ++R+  +   +      
Sbjct: 297 VRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPH 356

Query: 288 KKKLKYHDSNEHQ 300
           +KKL++H + E +
Sbjct: 357 QKKLRFHLAKERK 369


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 287 SKKKLKYHDSNEHQNGSDSVDGLAAKSVINEPEKDIKATGNNVKSVIKKFECEINA 342
           S ++    +S E Q   D +       V  E  + +K    N+K+ +K+F  E  A
Sbjct: 400 STRRPSRRNSCESQMMGDEMSLRELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKA 455


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 673 CYESIPNSPSMVKLRNNLKKQLASAVQKRLSFDTVSNISQSTLSSEQKTNSIYGQRSVIS 732
           C E + N P+   L + L   + +   K L   T+S  S+  ++ +++   +      IS
Sbjct: 714 CQEPVTNRPTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQETGVTLVVQEIS 773

Query: 733 FNGQEVAFQV 742
            +G + AF V
Sbjct: 774 SDGLKFAFDV 783


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 476 DYEVLEPRESENIVVI 491
           DYEV+E RE  N+V I
Sbjct: 35  DYEVVESRELTNLVEI 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,490
Number of Sequences: 429
Number of extensions: 8530
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 774
length of database: 140,377
effective HSP length: 63
effective length of query: 711
effective length of database: 113,350
effective search space: 80591850
effective search space used: 80591850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)