GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002799-TA|BGIBMGA002799-PA|undefined
         (122 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   3.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   4.4  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    20   7.8  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 65  TTDTPRKVDITSELHKFRRRLISKDKLINNLRKKNSR 101
           +T+   K D +   ++FR +++++    NN   KN R
Sbjct: 87  STEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMR 123


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 78  LHKFRRRLISKDKLINNLRKKNSRL 102
           ++K+R  L   + L  +LRK NSRL
Sbjct: 63  INKWRFLLQCLEDLDRSLRKLNSRL 87


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 23  IPDDGGDTEVCRTCSMSDVENKEVNTSLST 52
           + +D     VCR C  S      + T L T
Sbjct: 242 LEEDNQKPNVCRICGKSYARPSTLKTHLRT 271


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory
          receptor candidate 1 protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 36 CSMSDVENKEVNTSLSTSLILHI 58
          CS++     E+ T L+TS++L +
Sbjct: 53 CSVTFFALSELLTDLATSILLKV 75


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,682
Number of Sequences: 317
Number of extensions: 713
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 114,650
effective HSP length: 50
effective length of query: 72
effective length of database: 98,800
effective search space:  7113600
effective search space used:  7113600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)