Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002799-TA|BGIBMGA002799-PA|undefined
(122 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 28 0.36
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 0.48
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 3.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 25 4.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 24 5.9
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 5.9
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 24 5.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 24 7.8
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 24 7.8
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 24 7.8
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 28.3 bits (60), Expect = 0.36
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 21 IEIPDDGGDTEVCRTCS-MSDVENKEVNTSLSTSLILHIHTTEGS 64
IEIP + + + CS M+ EN + T S+ ++ IHT + S
Sbjct: 948 IEIPANDIEVQDPEQCSCMNSTENDNITTENSSEIVQVIHTEDDS 992
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 0.48
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 17 PSVPIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITS 76
P V P+ GG + S+S+ + + SL ++ H+ T + S+ TP + + S
Sbjct: 397 PQVLSPKPNGGGHKSFRHSHSLSETSQQTLVPSLGSNGEYHLPTNDHSS--TPAQSERDS 454
Query: 77 ELHKFRRRLISKDKLINNLRKKNS 100
++ + R +L + L L ++ S
Sbjct: 455 DVEELREQLENLTALTKKLSERLS 478
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 3.4
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 18 SVPIEIPDDGGDTEVCRTCSMSDVENKEV---NTSLSTSLILHIHTTEGSTTDTPRKVDI 74
S+P + +DG D++ T S+SD ++K+V S + H + STT VD+
Sbjct: 783 SIPAIVSEDGADSD---TISVSDDKDKKVEGHRPSQDPTFSHHEYYPVISTTYPFFHVDV 839
Query: 75 TSELHKFRRRLI----SKDKLINN 94
TS + + R + K K++ N
Sbjct: 840 TSAVVDIQYRHVLDVNYKPKIVTN 863
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 33 CRTCSMSDVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSELH 79
CRTC S N +TS++L + G D P+ + I H
Sbjct: 32 CRTCLASLTPEGRKNNRFNTSVLLQVDDGSG---DRPKNILIDCGKH 75
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 43 NKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSEL 78
N NT +T T+E S+ TPR++ T EL
Sbjct: 729 NNAANTENNTLAKDKQQTSEASSPGTPRELKTTGEL 764
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 5.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 40 DVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVD 73
DVENK ++ + LI I T T D P +++
Sbjct: 1316 DVENKTFDSFTAVILIDLIEVTAKFTNDLPNEIE 1349
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 24.2 bits (50), Expect = 5.9
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 8 IKRLLKTAVPSVPIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTS 53
+++ LK +PSV +++ DT+ C+ + D+ +K +SLST+
Sbjct: 319 LRKKLKRGIPSVFVDVKSLYKDTKKCKV--VEDLVSKYA-SSLSTT 361
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 41 VENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITS 76
+ENKE N L+ + + ++T T++P I+S
Sbjct: 391 IENKEANNFLAPTSNVPAYSTPARPTESPPPPPISS 426
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 23.8 bits (49), Expect = 7.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 40 DVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSELHKFRRR 84
D++ KE S T + EG D K TS+L K RR
Sbjct: 180 DIQMKEPLDSQDTGAVSASSVNEGFRADQKSKDGETSDLIKIPRR 224
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 23.8 bits (49), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 70 RKVDITSELHKFRRRLISKDKLINNLRKKNSRL 102
RK T E ++F + S DKLIN + K S L
Sbjct: 99 RKYLETIEENEFDKVRKSSDKLINEIEKTKSSL 131
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,997
Number of Sequences: 5004
Number of extensions: 17780
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 10
length of query: 122
length of database: 2,362,478
effective HSP length: 65
effective length of query: 57
effective length of database: 2,037,218
effective search space: 116121426
effective search space used: 116121426
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)
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