Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002799-TA|BGIBMGA002799-PA|undefined
(122 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 29 1.4
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877... 27 4.1
12_01_0244 - 1821413-1822144 26 7.2
01_06_1764 - 39730655-39730789,39730917-39731048,39731257-397313... 26 7.2
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 26 9.6
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 26 9.6
02_05_0605 + 30300977-30301912 26 9.6
02_05_0341 - 28115835-28116404 26 9.6
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 31 EVCRTCSMSDVENKEVNTSLSTSLILHIHTTEGST-TDTPRK--VDITSELHKFRRRLIS 87
++ T S + KE N + T LH+H G+T D P +TS L +L+
Sbjct: 882 QIAHTICRSILHEKEPNNTFFTKSKLHLHVPAGATPKDGPSAGCTMVTSMLSLAMGKLVK 941
Query: 88 KD 89
KD
Sbjct: 942 KD 943
>02_04_0300 +
21784634-21784691,21784784-21784893,21787486-21787771,
21788292-21788472,21788978-21789195,21789511-21789631,
21789703-21789800,21789894-21790105,21790199-21790311,
21790404-21790499,21790626-21790841,21790958-21791099,
21791280-21791525,21792078-21792389
Length = 802
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 41 VENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSELHKFRRRLIS 87
+E +E + ++ + L +H + GS + K ++ + RR+L+S
Sbjct: 698 IEREESDGKMTNGVSLLVHASGGSMSVDEAKTEVMKRIDASRRKLLS 744
>12_01_0244 - 1821413-1822144
Length = 243
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 8 IKRLLKTAVPSVPIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTSLI 55
++RL + +E + G D ++ C+M + EVN S +T I
Sbjct: 141 LRRLAEFVGHPFTVEEQEAGVDRKIVEICAMESLSRLEVNLSGTTDFI 188
>01_06_1764 -
39730655-39730789,39730917-39731048,39731257-39731301,
39731390-39731506,39731631-39731811,39732453-39732541,
39733177-39733217,39733520-39733638,39733720-39733820,
39734098-39734163,39734247-39734329,39734570-39734750,
39734846-39734965
Length = 469
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 11 LLKTAVPSVPIEIPDDGGDTEVCRTC 36
+L+TA SVP++I + GG + C C
Sbjct: 139 ILRTANLSVPLKIYEIGGGSGTCAKC 164
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 3 VSAKGIKRLLKTAVPSVPIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTSLILHIHTTE 62
+ A I R L + I++P+ G ++ R S+ V+ S STS + ++
Sbjct: 171 IKAHAISRFLLDNCRAHRIKVPNSSGIAQIQRIPKKSEPSPSVVSRSRSTSSVTNVPKPT 230
Query: 63 GSTTDTPRKVDITSE-LHK 80
+TSE HK
Sbjct: 231 TRPATARHYFSVTSECTHK 249
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 25.8 bits (54), Expect = 9.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 18 SVPIEIPDDGGDTEVCRTCSMSDVENKEVNTSLSTSLILHIHTTEGSTTDTPRKVDITSE 77
S+P + D D++ DV VN +ST+ +L T + + + R D +
Sbjct: 28 SLPAKDDDYNCDSDDNSASHDMDVSQPHVN-EISTNELLK--TLKRKLSKSKRSED---D 81
Query: 78 LHKFRRRLISKDKLINNLRKK 98
K R +I +D++IN+L+KK
Sbjct: 82 NIKVLRDIIQRDQIINSLKKK 102
>02_05_0605 + 30300977-30301912
Length = 311
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 4 SAKGIKRLLKTAVPSVPIEIPDDG-GDTEVCRTC 36
+AKG + K AV S+P + D GDT+ C C
Sbjct: 202 AAKGARAAAKAAVESLPTVVVDAARGDTQ-CAVC 234
>02_05_0341 - 28115835-28116404
Length = 189
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 6 KGIKRLLKTAVPSVPIEIPDDGGDTEVCRTC 36
KG+K+ + ++P+V GG+ E C C
Sbjct: 73 KGVKKEVLRSLPTVTYVSDGGGGEAEECAIC 103
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,777
Number of Sequences: 37544
Number of extensions: 109382
Number of successful extensions: 298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 9
length of query: 122
length of database: 14,793,348
effective HSP length: 74
effective length of query: 48
effective length of database: 12,015,092
effective search space: 576724416
effective search space used: 576724416
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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