GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002798-TA|BGIBMGA002798-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   113   2e-26
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.81 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   3.3  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   4.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   4.3  
SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|ch...    26   5.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   10.0 

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  113 bits (272), Expect = 2e-26
 Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 100 ESGVSGDLIFTQIVPNGPVTIEGNVTGL-APGLHGLHVHQTGDIKDNCKDIGPHFFAYYG 158
           +S VSG + F Q+  N  V++  ++ G  A    G H+HQ GD  + C   GPHF     
Sbjct: 11  DSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGK 70

Query: 159 RHGGPRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA 218
            HG     +RHVGDLGN++++ +  +     D +ISL G  S++GR+I I   EDD G+ 
Sbjct: 71  THGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKG 130

Query: 219 STEDSALTGTSGPAVACGIIG 239
           ++E+S  TG +G   ACG+IG
Sbjct: 131 TSEESLKTGNAGARNACGVIG 151


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 165  DPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDD 214
            D I H GDLG +  +  +       D  I L G R  +G   A+ KS  +
Sbjct: 3093 DRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIGEINAVIKSSSE 3142


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 30  YGRNLIIKSLPAIEDYQSPVYEVYMEPYLYALGQTTYPLNDNRA 73
           Y  N++ + L  I  +  PVY +    + ++ G   YP  +N A
Sbjct: 158 YSVNVVSRELSPIY-WDGPVYRILRGTWFFSRGDKLYPCEENLA 200


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 41  AIEDYQSPVYEVYMEPYLYALGQT 64
           A ED ++P +++Y++ Y+  +G T
Sbjct: 511 AAEDVETPWFDIYVKEYIPVIGNT 534


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 78  DLSMAPHHAPGLQAVVHFIADEESGVSGDLIFTQIVP 114
           D S++ HH+  +QAV+H  +  + G    +   Q+VP
Sbjct: 816 DSSLSMHHSSVVQAVMHICS--QMGSKSTVFLPQVVP 850


>SPAC8C9.05 |||D-Tyr-tRNA deacylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 149

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 100 ESGVSGDLIFTQIVPNGPVTI 120
           + GV G ++  Q+V NGPVTI
Sbjct: 123 KKGVFGAMMNVQLVNNGPVTI 143


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 182 ATLNLKIVDHLISLAGPRSVVGR--SIAISKSEDDYGRASTEDSALTGTSGPAV 233
           +T    IV H  S  GP +V     S++ + +    G + +  + LTG+SGP V
Sbjct: 721 STTLTSIVTHSGSETGPTTVYIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVV 774


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 106 DLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDI 149
           ++I + I  N  + +E  ++ L P L  L  +   +I D  KD+
Sbjct: 470 NIISSVIGRNAELDLENPISSLLPALEQLSNYSNREISDLAKDV 513


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.140    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,331
Number of Sequences: 5004
Number of extensions: 47905
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 9
length of query: 242
length of database: 2,362,478
effective HSP length: 71
effective length of query: 171
effective length of database: 2,007,194
effective search space: 343230174
effective search space used: 343230174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)