Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002798-TA|BGIBMGA002798-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(242 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 138 3e-33
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 135 3e-32
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 134 6e-32
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 120 1e-27
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 40 0.002
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 40 0.002
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 28 5.9
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 28 5.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 138 bits (335), Expect = 3e-33
Identities = 62/137 (45%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
V G + F Q +GP T+ G+V+GL PGLHG H+H GD + C GPH+ HG
Sbjct: 132 VKGTIHFVQ-EGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGA 190
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRASTED 222
P D RH GDLGN+ A E+ N+ +VD I L GP S++GR++ + DD G+ E
Sbjct: 191 PEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHEL 250
Query: 223 SALTGTSGPAVACGIIG 239
S TG +G VACGIIG
Sbjct: 251 SKTTGNAGGRVACGIIG 267
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 135 bits (326), Expect = 3e-32
Identities = 65/147 (44%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 93 VHFIADEESGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPH 152
V +A E GV G + F+Q +GP ++ G+V+GL PGLHG HVH GD + C GPH
Sbjct: 5 VAVLASSE-GVKGTIFFSQ-EGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 153 FFAYYGRHGGPRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSE 212
F HG P+D RH GDLGNI A + N+ + D I L G S++GR++ +
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 213 DDYGRASTEDSALTGTSGPAVACGIIG 239
DD G+ E S TG +G VACGIIG
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGIIG 149
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 134 bits (324), Expect = 6e-32
Identities = 65/139 (46%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 101 SGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRH 160
S V G + TQ GP T+ VTGL PGLHG H+H+ GD + C GPHF H
Sbjct: 62 SQVEGVVTLTQD-DQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTH 120
Query: 161 GGPRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRAST 220
G P D +RH GDLGNI A E IVD I L+GP SVVGR+ + + EDD G+
Sbjct: 121 GAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGH 180
Query: 221 EDSALTGTSGPAVACGIIG 239
E S TG +G +ACG++G
Sbjct: 181 ELSLSTGNAGGRLACGVVG 199
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 120 bits (289), Expect = 1e-27
Identities = 56/121 (46%), Positives = 71/121 (58%)
Query: 97 ADEESGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAY 156
A S V+G L F Q G + G VTGLAPGLHG H+H GD + C GPHF +
Sbjct: 17 AGGNSAVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPH 76
Query: 157 YGRHGGPRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYG 216
HG P D RHVGDLGNI A ++ ++ I D ISL+GP S++GR++ + DD G
Sbjct: 77 NKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLG 136
Query: 217 R 217
R
Sbjct: 137 R 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 120 IEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGGPRDPIRHVGDLGNIKAE 179
+E +GL+PG HG +++ GD+ + G + R P +GDLG ++A
Sbjct: 192 VEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAG 245
Query: 180 EEATLNLKIVDHLISLAGPRSVVGRSIAISKSED 213
E+ + + ++GRSIA+ +ED
Sbjct: 246 EKGEAQFSASKEKLKVV---DLIGRSIALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 96 IADEESGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNC 146
+ D+E L ++ + +T++ NV+GL P LHG HVH G + C
Sbjct: 15 LQDQERAEKVMLKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGC 65
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
+ G I + G V+I G + +A H +++T ++ N HF Y R G
Sbjct: 50 IEGTYIDKKCPFTGTVSIRGRI--IAGTCHSAKMNRTIIVRRNYL----HFVKKYQRQGA 103
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLI 193
P R+ NI A +K DH+I
Sbjct: 104 NLPPCRYEKRHSNIPAHVSPCFRVKEGDHVI 134
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
+ G I + G V+I G + +A H +++T ++ N HF Y R G
Sbjct: 50 IEGTYIDKKCPFTGTVSIRGRI--IAGTCHSAKMNRTIIVRRNYL----HFVKKYQRQGA 103
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLI 193
P R+ NI A +K DH+I
Sbjct: 104 NLPPCRYEKRHSNIPAHVSPCFRVKEGDHVI 134
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.140 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,680,245
Number of Sequences: 37544
Number of extensions: 335264
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 8
length of query: 242
length of database: 14,793,348
effective HSP length: 80
effective length of query: 162
effective length of database: 11,789,828
effective search space: 1909952136
effective search space used: 1909952136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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