Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002798-TA|BGIBMGA002798-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(242 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 137 6e-33
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 137 6e-33
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 137 6e-33
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 137 6e-33
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 122 3e-28
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 116 2e-26
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 116 2e-26
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 116 2e-26
Z81110-3|CAB03260.1| 949|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 33 0.25
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 137 bits (332), Expect = 6e-33
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
V+G + TQ N IEG + GL PGLHG HVHQ GD + C GPHF + HGG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA---S 219
P+ IRHVGDLGN++A + +K+ D L++L GP +VVGRS+ + +DD G
Sbjct: 74 PKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDK 133
Query: 220 TEDSALTGTSGPAVACGII 238
E+S TG +G ACG+I
Sbjct: 134 AEESKKTGNAGARAACGVI 152
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 137 bits (332), Expect = 6e-33
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
V+G + TQ N IEG + GL PGLHG HVHQ GD + C GPHF + HGG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA---S 219
P+ IRHVGDLGN++A + +K+ D L++L GP +VVGRS+ + +DD G
Sbjct: 74 PKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDK 133
Query: 220 TEDSALTGTSGPAVACGII 238
E+S TG +G ACG+I
Sbjct: 134 AEESKKTGNAGARAACGVI 152
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 137 bits (332), Expect = 6e-33
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
V+G + TQ N IEG + GL PGLHG HVHQ GD + C GPHF + HGG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA---S 219
P+ IRHVGDLGN++A + +K+ D L++L GP +VVGRS+ + +DD G
Sbjct: 74 PKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDK 133
Query: 220 TEDSALTGTSGPAVACGII 238
E+S TG +G ACG+I
Sbjct: 134 AEESKKTGNAGARAACGVI 152
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 137 bits (332), Expect = 6e-33
Identities = 63/139 (45%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 103 VSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGG 162
V+G + TQ N IEG + GL PGLHG HVHQ GD + C GPHF + HGG
Sbjct: 36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 95
Query: 163 PRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA---S 219
P+ IRHVGDLGN++A + +K+ D L++L GP +VVGRS+ + +DD G
Sbjct: 96 PKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDK 155
Query: 220 TEDSALTGTSGPAVACGII 238
E+S TG +G ACG+I
Sbjct: 156 AEESKKTGNAGARAACGVI 174
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 122 bits (293), Expect = 3e-28
Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 101 SGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRH 160
+ V G + TQ EG + GL+PGLHG H+HQ GD D C GPHF H
Sbjct: 32 TAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNH 91
Query: 161 GGPRDPIRHVGDLGNIKAEEEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRA-- 218
GG +RHVGDLGN++A + +K D ++SL G +V+GRS+ + DD G+
Sbjct: 92 GGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGID 151
Query: 219 -STEDSALTGTSGPAVACGII 238
E+S TG +G ACG+I
Sbjct: 152 DKAEESLKTGNAGARAACGVI 172
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 116 bits (278), Expect = 2e-26
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 120 IEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGGPRDPIRHVGDLGNIKAE 179
+ G+V+GLA G HG H+H+ GD + C G H+ + HG P D RH+GDLGNI++
Sbjct: 55 LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESP 114
Query: 180 EEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRASTEDSALTGTSGPAVACGIIG 239
+ + D L SL+G S++GRS+ I + DD GR +++ S TG +G +ACG IG
Sbjct: 115 ASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 116 bits (278), Expect = 2e-26
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 120 IEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGGPRDPIRHVGDLGNIKAE 179
+ G+V+GLA G HG H+H+ GD + C G H+ + HG P D RH+GDLGNI++
Sbjct: 55 LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESP 114
Query: 180 EEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRASTEDSALTGTSGPAVACGIIG 239
+ + D L SL+G S++GRS+ I + DD GR +++ S TG +G +ACG IG
Sbjct: 115 ASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 116 bits (278), Expect = 2e-26
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 120 IEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPHFFAYYGRHGGPRDPIRHVGDLGNIKAE 179
+ G+V+GLA G HG H+H+ GD + C G H+ + HG P D RH+GDLGNI++
Sbjct: 55 LNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESP 114
Query: 180 EEATLNLKIVDHLISLAGPRSVVGRSIAISKSEDDYGRASTEDSALTGTSGPAVACGIIG 239
+ + D L SL+G S++GRS+ I + DD GR +++ S TG +G +ACG IG
Sbjct: 115 ASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>Z81110-3|CAB03260.1| 949|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 949
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 93 VHFIADEESGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPH 152
V + E G F+Q+ + I G V L G H + +HQ GD + C +G
Sbjct: 823 VAILITREGAHIGRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 881
Query: 153 F 153
F
Sbjct: 882 F 882
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 93 VHFIADEESGVSGDLIFTQIVPNGPVTIEGNVTGLAPGLHGLHVHQTGDIKDNCKDIGPH 152
V + E G F+Q+ + I G V L G H + +HQ GD + C +G
Sbjct: 676 VAILITREGAHIGRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAP 734
Query: 153 F 153
F
Sbjct: 735 F 735
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.140 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,226,688
Number of Sequences: 27539
Number of extensions: 267711
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 12,573,161
effective HSP length: 79
effective length of query: 163
effective length of database: 10,397,580
effective search space: 1694805540
effective search space used: 1694805540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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