GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002797-TA|BGIBMGA002797-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   0.79 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   1.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   4.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.2  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    24   7.4  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    24   7.4  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.7  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 0.79
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 11  KNKSTKEEDSTYREFWDKIQNNLECCGVTGPDNYGASEPRL 51
           K+ S   +   +  +   IQ N+     +GP NYG S+P L
Sbjct: 103 KSHSALTDFEAFDPYDANIQRNMYRMDASGPANYGESKPTL 143


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 17/54 (31%), Positives = 22/54 (40%)

Query: 10  IKNKSTKEEDSTYREFWDKIQNNLECCGVTGPDNYGASEPRLNPSFSCCPPDDS 63
           +K K  KE +   RE   K Q   +  G TG D   +SE       S    +DS
Sbjct: 177 VKTKKEKEREKKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS 230


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 1   MKTQLRASFIKNKSTKEEDSTYREFWDKIQNNLECC 36
           +K  L A+  KN     E STY+E  D++QN    C
Sbjct: 447 LKNDLNATRKKNGVYLAE-STYKELMDRVQNKDLLC 481


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 39  TGPDNYGASEPRLNPSFSCCPPDDSDRAVEIKRS 72
           TGP    AS+P    S S   P + D+  ++K++
Sbjct: 354 TGPSLSSASQPSAASSSSSSEPSNLDKINDVKKN 387


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 78  EKYYKEGCEDKVLSTVHSAGMT 99
           E++YK  C +  LS + ++G T
Sbjct: 714 ERFYKASCSEIKLSYIENSGFT 735


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 67  VEIKRSDCLSLEKYYKEGCEDKVLSTVHSAGMTVIVCGIL 106
           V ++R +C +   Y+ E C+D +       G+ +   G L
Sbjct: 74  VAMERKECANQLSYWGEDCDDDISDISDKLGVLLYEIGEL 113


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 1  MKTQLRASFIKNKSTKEEDSTYREFWDKIQNNLE 34
          M+T++ AS I  +    E +   EFW+ +   L+
Sbjct: 1  MQTEIDASVIVKEKEWLETNVLPEFWESMSEGLK 34


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,313
Number of Sequences: 5004
Number of extensions: 22632
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)