Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002797-TA|BGIBMGA002797-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
(119 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0094 + 22343593-22343865,22345246-22345323,22345435-223455... 28 2.3
03_05_0501 - 24944533-24945507 28 2.3
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 27 3.0
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 27 4.0
01_07_0356 + 43009360-43009671,43010203-43010419,43010527-43011011 27 4.0
01_07_0205 - 41978437-41980599,41980805-41981215 27 5.3
11_04_0141 + 13947716-13947770,13947885-13949095 26 7.0
09_02_0084 + 4106803-4106851,4108165-4108460 26 7.0
05_06_0268 + 26792845-26792891,26793050-26793830 26 7.0
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 26 7.0
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555... 26 7.0
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514 26 9.2
05_04_0145 - 18391112-18392461,18392545-18392637 26 9.2
>05_05_0094 +
22343593-22343865,22345246-22345323,22345435-22345533,
22345830-22345925,22345968-22346150
Length = 242
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 50 RLNPSFSCCPPDDSDRAVEIKRSDCLSLEKYYKEGCEDKVLSTVHSAGMTVIVCGILFCF 109
R+ PSF+ D EIKR + Y ++ S+ S+ ++I+CGI+ C
Sbjct: 69 RVPPSFAPDVEDAESPLHEIKRKILIIGSAMYSVPVDEH--SSNDSSRTSIIICGIILCP 126
Query: 110 LEVRCSV 116
L + +V
Sbjct: 127 LTLALTV 133
>03_05_0501 - 24944533-24945507
Length = 324
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 34 ECCGVTGPDNYGASEPRLNPSFSCCPPDDSDRAVEIKRSDCLSLEKYYKE 83
E CGV G +G E L + CPP +RAV + + + K +++
Sbjct: 143 EGCGVAGGVGFGVDEDPLEGFETRCPP-GGERAVVLYTTSLRGVRKTFED 191
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 43 NYGASEPRLNPSFSCCPPDDSDRAVEIKRSDCLSLEK 79
N G P+L+ F C DDS + S+C ++ K
Sbjct: 207 NAGTPRPQLSSCFLICMNDDSIEGIYDTLSECATISK 243
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 41 PDNYGASEPRLNPSFSCCPPDDSDRAVEI--KRSDCLS 76
P+N A+ P++ P PP D RA EI KR++ LS
Sbjct: 35 PENAFAAAPKMPPFDYTPPPYDGPRAEEISRKRAEFLS 72
>01_07_0356 + 43009360-43009671,43010203-43010419,43010527-43011011
Length = 337
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 62 DSDRAVEIKRSDCLSLEKYYKEGCEDKVLSTVHSAGMTVIVCGILFCFLEVRCSVS 117
DSD A+ +D +S+ K + E+++LS VHS ++ +L F +CS S
Sbjct: 90 DSDSALSDHLADNISIYKQGGDEKENELLSMVHSLLFSIHESDLL-AFKRGQCSAS 144
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 24 EFWDKIQNNLECCGV 38
E WD+++ +LECCG+
Sbjct: 224 EKWDRLKISLECCGL 238
>11_04_0141 + 13947716-13947770,13947885-13949095
Length = 421
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 34 ECCGVTGPDNYGASEPRLNPSFSCCPPDDSDRAV 67
+CC + YG S P L S P D DRAV
Sbjct: 37 KCCKLRMWRKYGLSPPELPASQPPRPRSDDDRAV 70
>09_02_0084 + 4106803-4106851,4108165-4108460
Length = 114
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 42 DNYGASEPRLNPSFSCCPPDDSDRAVEIKRSDCLSLEKYYKEGCEDKVLSTVHSAGMTVI 101
D A+ P LN F D AVE+ +L+KYYK E + MT
Sbjct: 42 DIANAAAPILNAIFQNGLGSSFDDAVELFDKLQCALDKYYKNIAEAATKWASQALAMTKT 101
Query: 102 VCGILFC 108
+ + FC
Sbjct: 102 LNQLKFC 108
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 39 TGPDNYGASEPRLNPSFSCCPPDDSDRAVEIKRSDCLSLEKYYKEGCED-KVLSTVHSAG 97
T P N G +E R S +++D E DC L+ E E+ ++ +H AG
Sbjct: 205 TNPQNQGGTEEREGESSGDDDCNETDSDYESSEEDCNILKIQDNENHENFELFKLLHHAG 264
Query: 98 MTVIVC 103
C
Sbjct: 265 CYDCYC 270
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 43 NYGASEPRLNPSFSCCPP 60
NY +S+PRL+ FS C P
Sbjct: 232 NYMSSQPRLDRRFSVCDP 249
>02_05_1080 -
33955034-33955117,33955199-33955300,33955381-33955510,
33955674-33955783,33955827-33955950,33956042-33956136,
33956205-33956300,33956419-33956551,33956668-33956759,
33956844-33956948,33957201-33957335,33957421-33957526,
33957621-33957748,33957860-33957958,33958049-33958228,
33958303-33958446,33958533-33958647,33958739-33958905
Length = 714
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 15 TKEEDSTYREFWDKIQNNLECCGVTGPDNYGASE 48
T +E+ ++EF + ++ C + GP YG S+
Sbjct: 310 TLDEEMEFKEFAQRPDAYVKICSMIGPSIYGHSD 343
>06_03_1498 +
30589634-30589750,30590441-30590577,30590797-30591514
Length = 323
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 37 GVTGP--DNYGASEPRLNPS---FSCCPPDDSDRAVEIKRSD 73
G++ P D++ AS P L+P SCCPP D +E + SD
Sbjct: 2 GISHPLSDDFDAS-PVLSPPPPPSSCCPPAHDDHYLEHQISD 42
>05_04_0145 - 18391112-18392461,18392545-18392637
Length = 480
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 37 GVTGPDNYGASEPRLNPSFS 56
G+T P N G S PR P F+
Sbjct: 248 GITVPGNSGGSRPRYTPFFT 267
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,181
Number of Sequences: 37544
Number of extensions: 144901
Number of successful extensions: 400
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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