GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002797-TA|BGIBMGA002797-PA|IPR000301|CD9/CD37/CD63
antigen, IPR008952|Tetraspanin
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    35   3e-04
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   0.94 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 34.7 bits (76), Expect = 3e-04
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 19  DSTYREFWDKIQNNLECCGVTGPDNYGASEPRLNPSFSCCPPDDSDRAVEIKRSDCLSLE 78
           +S  ++F D IQ NL+CCGV    +Y   +P   P+ SCC   +++           S+ 
Sbjct: 129 NSESKDFIDFIQKNLQCCGVHSLSDYN-DKP--IPA-SCCNSPENNTC---------SIS 175

Query: 79  KYYKEGCEDKVLSTVHSAGMTVIVCGILFCFLEV 112
             Y  GC + +  TV  AG       I    +E+
Sbjct: 176 NSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVEL 209


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 0.94
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 54  SFSCCPPDDSDRAVEIKRSDCLSLEKYYKEGCEDKVLSTVHSAGMT-VIVCGILFCFL 110
           S +C  P  SD A     S    + + +++ C ++V     +AG   V+V G + C+L
Sbjct: 265 SVTCDRP--SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGTLAVVVGGFVACWL 320


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 52  NPSFSCCPPDDSDRAVEIKRSDCLSLEK 79
           N S +   P D DRA+E  RS   S+++
Sbjct: 514 NASPTTWSPADLDRALEAIRSGQTSVQR 541


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 55  FSCCPPDDSDRAVEIK 70
           +SCCP    D   EI+
Sbjct: 193 YSCCPEPYPDITYEIR 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,393
Number of Sequences: 429
Number of extensions: 1724
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)