GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002793-TA|BGIBMGA002793-PA|IPR007266|Endoplasmic
reticulum oxidoreductin 1
         (513 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    29   0.077
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        28   0.18 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.24 
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    22   8.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 0.077
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 65  RIQSIVTKDYFRFYKVNLKKE-CPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVD 123
           R+     K +F+  +V  KKE  P  A  +    K C ++TC+    P +E    +E +D
Sbjct: 155 RLSEKQVKIWFQNRRVKYKKEDLPAAAGKASNGNKCCCLRTCSSAKRPKFENSSCDEDID 214

Query: 124 ET 125
            T
Sbjct: 215 VT 216


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 327 YLEQEEYFTGNPTEDEETRQAISNMLGVIYSFPEHFNESSMFKGGSQV 374
           +LEQ     G P E       IS+++ VI + P+ F+ES+MF GG ++
Sbjct: 5   HLEQTLENAGMPDESIN----ISDVIEVIETDPD-FHESTMFNGGGEI 47


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 220 RPKLNPYESFPYV--LSSDLSNLCLETRVFYRAISGLHTSI 258
           RPK+ P    P    LS  L   CL TR+FY  ++ L+  I
Sbjct: 250 RPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKI 290


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 214 YQENCFRPKLNPYESFPYVLSS 235
           Y E C +  L  Y S P++  S
Sbjct: 46  YMERCIKEVLRLYPSVPFIARS 67


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,630
Number of Sequences: 317
Number of extensions: 5686
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 513
length of database: 114,650
effective HSP length: 60
effective length of query: 453
effective length of database: 95,630
effective search space: 43320390
effective search space used: 43320390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)