GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002793-TA|BGIBMGA002793-PA|IPR007266|Endoplasmic
reticulum oxidoreductin 1
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...   209   8e-55
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...   146   8e-36
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    31   0.38 
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    28   3.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   3.6  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score =  209 bits (510), Expect = 8e-55
 Identities = 140/438 (31%), Positives = 218/438 (49%), Gaps = 53/438 (12%)

Query: 59  NVKIFPRIQSIVTK-DYFRFYKVNL-KKECPFWADDS-RCAMKYCHIKTCTKESVPGYET 115
           N ++ P +  +  K DY RFY++NL  KEC +  DD+  C    C++    ++ VP   +
Sbjct: 63  NSRVSPLLFDLTEKSDYMRFYRLNLFNKECRYNLDDNVACGSSACNVLVTDEQDVPEVWS 122

Query: 116 GYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDN 175
             +   + E    + S++     +S ++H  ++S   +             ++ D+AH  
Sbjct: 123 SKSLGKL-EGFMPELSRQIVETDRSVMEHVDKISQSCLLE-----------RLDDEAHQY 170

Query: 176 FCESXXXXXXXXXXXLTLNPERYTGYKGPSAHRIWRSIYQENCFRPKLNPYESFP----- 230
                          L  NPER+TGY GP + RIW  IY + C      P   FP     
Sbjct: 171 CYVDNELDSGCVYVSLLENPERFTGYSGPHSTRIWEMIYNQ-CLPDSSAPTIDFPALFMQ 229

Query: 231 -----------YVLSSDLSNLCLETRVFYRAISGLHTSINIHLCSKFLLSEKSLGFVAPP 279
                       +L   +    LE RVFYR +SG+H+SI+ HLC          G++   
Sbjct: 230 GPLAPPPKPQEQLLKERMDAWTLEQRVFYRVLSGMHSSISTHLCH---------GYLNQR 280

Query: 280 EGEWGPNLEEFQRRFDPSQTMGESTNWLKNLYFVYLLEMRALAKAGPYLEQEEYFTGNPT 339
            G WGPNL+ FQ +      +      L+NLYF Y L  RA+ K   +L+   +   +  
Sbjct: 281 NGVWGPNLQCFQEK------VLNYPERLENLYFAYALMQRAIDKLYGHLDSLTFCHDSVL 334

Query: 340 EDEETRQAISNMLGVIYSFPEHFNESSMFKGGSQVET-LKNEFRDHFRNISRIMDCVGCD 398
           +D E RQ I+ ++ +I++ P+ F+E+ +F G   + T LK +FR+HF+ +S +MDCVGC+
Sbjct: 335 QDSEVRQKIAGLVSLIHNSPKMFDETMLFAGDPSISTALKEDFREHFKTVSALMDCVGCE 394

Query: 399 KCKLWGKLQTQGLGTALKILFSDKWNSPEADPSSGKLPLRHKSHKKLQRTEIVALFNAFA 458
           +C+LWGK+QT G GTALKILF       E      +         +L+R+EIVAL N F 
Sbjct: 395 RCRLWGKIQTNGFGTALKILFEVSNIEDEVTNFDSR-----SFSLRLRRSEIVALINTFD 449

Query: 459 RLSNSIRELENFRIMLSQ 476
           RLS SI  +++F+ + S+
Sbjct: 450 RLSRSINFVDDFKQIYSE 467


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score =  146 bits (353), Expect = 8e-36
 Identities = 134/420 (31%), Positives = 188/420 (44%), Gaps = 93/420 (22%)

Query: 73  DYFRFYKVNL-KKECPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYS 131
           DYF +Y+VNL +  CP W +D+  AM  C  + C  +S+        NE   E P  K  
Sbjct: 54  DYFSYYRVNLYRSSCPLWENDN--AM--CSNQGCAVKSL--------NEI--EIP--KVW 97

Query: 132 KEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDNFCESXXXXXXXXXXXL 191
           K+         D +P         S  N  +   WK + D    + ++           L
Sbjct: 98  KKLS-------DFEPH--------SKKNDTK-CNWKYNPDLDYCYLDNSTSPDEYVYVSL 141

Query: 192 TLNPERYTGYKGPSAHRIWRSIYQENCF----------RPKLNPY---ESFPYVL----- 233
             NPER+TGY G  +  IWRSIY++NCF          +PK N        P  L     
Sbjct: 142 VQNPERFTGYAGDHSAAIWRSIYEQNCFVVDDDDNPSEQPKSNALFRPNQIPLNLFTENH 201

Query: 234 ---SSDLSNLCLETRVFYRAISGLHTSINIHLCSKFLLSEKSLGFVAPPEGEWGPNLEEF 290
              S   S  CLE R+F R ISG H SI+ H+C  +   E         E  W  NL+ +
Sbjct: 202 DDTSLSPSVACLEKRMFNRIISGFHASISTHVCQNYYDVE---------EQRWTQNLDWW 252

Query: 291 QRRFDPSQTMGESTNWLKNLYFVYLLEMRALAKAGPYLEQ---EEYFTGNPTE---DEET 344
           + +      +G   + ++N++F Y L  +AL +    ++    +  FT  PT+   D  T
Sbjct: 253 RAK------VGSFPDRIENIFFNYALLHQALVQIATQMKNITSDSSFTFCPTDKDVDWRT 306

Query: 345 RQAISNMLGVIYSFPEHFNESSMFKGGSQVETLKNEFRDHFRNISRIMDCVGCDKCKLWG 404
             A   ++   Y    H      F    + +  K+ FR HFR+ISRIMDCVGCDKC+LWG
Sbjct: 307 HTAFEQLVYHAYQ-DRHVINREQFFADEEAKRFKDSFRKHFRDISRIMDCVGCDKCRLWG 365

Query: 405 KLQTQGLGTALKILFSDKWNSPEADPSSGKLPLRHKSHKKLQRTEIVALFNAFARLSNSI 464
           K+Q  G GTALK+L       PE   S             L+  E+VAL N F R+S+S+
Sbjct: 366 KVQITGYGTALKLLL-----EPETQLSD------------LRPEEVVALVNTFDRISHSV 408


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 359 PEHFNESSMFKGGSQVETLKNEFRDHFRNISRIMDC 394
           P +  +  MF GG   ET  +  RD+F     ++DC
Sbjct: 157 PFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDC 192



 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 360 EHFNESSMFKGGSQVETLKNEFRDHFRNISRIMD 393
           E    + MF GG   +  + EFR+ F    R++D
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLD 275


>SPCC1223.15c |spc19||DASH complex subunit
          Spc19|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 36 CFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIV 70
          C D L  S+G  S  +DT++  + +  FPRI+ I+
Sbjct: 10 CVDSLQISIGTLSSSIDTLE--SGIHDFPRIKHIL 42


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 63   FPRIQSIVTKDYFRFYKVNLKKECPFWADDS 93
            FP     +T  +F+ YK++++    +W D S
Sbjct: 1059 FPNETRFMTSFFFQIYKISMRNFVAYWRDSS 1089


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,680
Number of Sequences: 5004
Number of extensions: 110845
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 11
length of query: 513
length of database: 2,362,478
effective HSP length: 76
effective length of query: 437
effective length of database: 1,982,174
effective search space: 866210038
effective search space used: 866210038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)