GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002793-TA|BGIBMGA002793-PA|IPR007266|Endoplasmic
reticulum oxidoreductin 1
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627...   134   1e-31
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148...    31   2.2  
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    30   3.8  
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432     30   5.1  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   6.7  
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387...    29   8.9  

>03_05_1032 -
           29861859-29862011,29862347-29862470,29862557-29862759,
           29863081-29863199,29863489-29863623,29863695-29863950,
           29864749-29864880,29865001-29865222
          Length = 447

 Score =  134 bits (325), Expect = 1e-31
 Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 25/231 (10%)

Query: 42  GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 101
           G + DC C  +T+D  N   + P +Q +VT  +FR++KV L  +CPFW DD  C ++ C 
Sbjct: 81  GMVEDCCCDYETVDAINEEVLHPILQELVTLPFFRYFKVKLWCDCPFWPDDGMCRLRDCS 140

Query: 102 IKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 161
           +  C +   P     +   Y   +P +   +E +     D   D ++      I   N +
Sbjct: 141 VCECPENEFP---EPFKKPYSGLSPDSMICQEGKPQATVDRTLDAKV--FKGWIETDNPW 195

Query: 162 EIAKWKVHDDAHDNFCESXXXXXXXXXXXLTLNPERYTGYKGPSAHRIWRSIYQENCFRP 221
                  +DD  DN  E            L LNPERYTGY G SA RIW S+Y+ENC  P
Sbjct: 196 ------TYDDETDNVAEKNIISAEMTYVNLQLNPERYTGYTGDSARRIWDSVYKENC--P 247

Query: 222 KLNPYESFPYVLSSDLSNLCLETRVFYRAISGLHTSINIHLCSKFLLSEKS 272
           K   Y S           +C E +  Y+ ISGLH+SI++H+   +LL E +
Sbjct: 248 K---YPS---------EEMCQEKKALYKLISGLHSSISVHIAYDYLLDESA 286



 Score =  114 bits (274), Expect = 2e-25
 Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)

Query: 309 NLYFVYLLEMRALAKAGPYLEQEEYFTGNPTEDEETRQAISNML---GVIYSFPEHFNES 365
           ++ + YLL+  A   A  YLEQ EY TGNP ED +T+  +  +L    +  + P  F+E+
Sbjct: 275 HIAYDYLLDESANL-AADYLEQAEYNTGNPEEDLKTQSLVKQLLYNPKLRSACPLPFDEA 333

Query: 366 SMFKGGSQVETLKNEFRDHFRNISRIMDCVGCDKCKLWGKLQTQGLGTALKILFSDKWNS 425
            +++G +  E LK E +  FRNIS IMDCVGC+KC+LWGKLQ  GLGTALKILFS     
Sbjct: 334 KLWQGENGPE-LKQEIQKQFRNISAIMDCVGCEKCRLWGKLQVLGLGTALKILFS----- 387

Query: 426 PEADPSSGKLPLRHKSHKKLQRTEIVALFNAFARLSNSI 464
                  G+  L      +LQR E++AL N   RLS S+
Sbjct: 388 -----VDGENHLNQS--LQLQRNEVIALVNLLNRLSESV 419


>01_01_0172 +
           1485170-1485176,1485480-1485511,1485622-1485870,
           1486350-1487813,1487906-1487959
          Length = 601

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 12  LFALAIVQAVGYDTELTKPCDSTACFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIVT 71
           L    +++    DT +  PCD     D+LH  + D S  VD   + N+  + P I     
Sbjct: 230 LLGAYVIEKPEVDTPMDLPCDD----DDLHLVIADRSFNVDGSLYMNSTGVAPNIHPQWA 285

Query: 72  KDYF 75
            +YF
Sbjct: 286 PEYF 289


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 314 YLLEMRALAKAGPYLEQEEYFTGNPTEDEETRQAISNMLGV 354
           Y++ MRA+++A P  ++E + T +P+    T  ++ + LG+
Sbjct: 258 YVVAMRAMSEAAPEDDEEAHITYSPSNSATTGFSVGSSLGL 298


>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
          Length = 314

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 241 CLETRVFYRAISGLHTSINIHLCSKFLLSEKSLGFVAPP 279
           C  T  F R + G   + +IH  +   L+E+   FV+PP
Sbjct: 190 CHHTASFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPP 228


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 348 ISNMLGVIYSFPEHFNESSMFKGGSQ-VETLKNEFRDHFRNISRIMDC---VGCDKCKLW 403
           I N  G  Y   E+ N+ S   G    + + K +++  F       +    V CDKCK W
Sbjct: 553 IINSTGSYYVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWWVQCDKCKAW 612

Query: 404 GKLQTQGLGTALKILFSDKWNSPEADPSSGKLPLRHKSHKKLQRTEIVALFNA 456
              Q Q     +  LF+ K   PEA+ +  K  L+ K ++ +   E   +  A
Sbjct: 613 ---QHQ-----ICALFNPKIVDPEAEYTCAKCFLKEKDNEDVDSLEPSTILGA 657


>06_02_0176 +
           12637287-12637376,12638108-12638280,12638631-12638743,
           12639125-12639313,12639397-12639464,12639601-12639684,
           12639791-12639844,12640445-12640525,12640615-12640708,
           12640830-12640903,12640976-12641086,12641299-12641355,
           12641458-12641562,12641656-12641772,12641900-12642003,
           12642229-12642394,12642513-12642641
          Length = 602

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 230 PYVLSSDLSNLCLETRVFYRAISGLHTSINIHLCSKFLLSEKSLGFV 276
           P  L+ DL N  +ET V +  I  +++ +  ++C+  L +EK   FV
Sbjct: 216 PVTLNGDLKNQFVETTVGFDTICKVNSQLISNVCTDALSAEKYYYFV 262


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,758
Number of Sequences: 37544
Number of extensions: 637179
Number of successful extensions: 1183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 8
length of query: 513
length of database: 14,793,348
effective HSP length: 85
effective length of query: 428
effective length of database: 11,602,108
effective search space: 4965702224
effective search space used: 4965702224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)