GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002793-TA|BGIBMGA002793-PA|IPR007266|Endoplasmic
reticulum oxidoreductin 1
         (513 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.     25   3.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   8.5  

>AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 340 EDEETRQAISNMLGVIYSFPEHFNE 364
           E +   Q +S+++  +YS PEH +E
Sbjct: 164 EGQPPGQLLSSIIAAVYSVPEHAHE 188


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 220 RPKLNPYESFPYV--LSSDLSNLCLETRVFYRAISGLHTSI 258
           RPK+ P         LS  L   CL TR+FY  ++ L+  I
Sbjct: 237 RPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKI 277


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,468
Number of Sequences: 2123
Number of extensions: 23720
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 513
length of database: 516,269
effective HSP length: 67
effective length of query: 446
effective length of database: 374,028
effective search space: 166816488
effective search space used: 166816488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)