GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002792-TA|BGIBMGA002792-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (215 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0205 - 41978437-41980599,41980805-41981215                       30   1.6  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    29   3.8  
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671...    28   5.0  
03_05_0513 - 25073518-25073623,25073719-25073777,25074048-250741...    28   5.0  

>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 99  QFFEDTRGADANSAESLKWDRLHVKFECCGV 129
           QF     G    +AE  KWDRL +  ECCG+
Sbjct: 210 QFLLVLDGVSRFNAE--KWDRLKISLECCGL 238


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 122 VKFECCGVTGPNDY-ATSGHVPFSCCGQGPLDSLHK 156
           V+ + CGV  PN + + +G +P     Q P DS+H+
Sbjct: 294 VQSQSCGVRYPNKHHSNNGDMPLVASIQSPKDSIHE 329


>06_01_0875 +
           6707483-6709394,6709750-6709829,6710077-6710174,
           6710704-6710840,6710961-6711301,6711402-6711599
          Length = 921

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 162 CAALYLRGCGKQLHEYTRQQLMLVSMTALCASIIQTYSVWGLVR--QGLLKQTH 213
           CA++ + G G Q+H+   +    V  TA+  ++I  YS  G +   + + KQ H
Sbjct: 377 CASIPMLGLGAQIHQLVEKS--FVPDTAISNALITMYSRCGALNDAEAIFKQMH 428


>03_05_0513 -
           25073518-25073623,25073719-25073777,25074048-25074185,
           25074719-25074982,25075062-25075306,25075874-25076081
          Length = 339

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 151 LDSLHKPYASECAALYLRGC 170
           LD+L  PYA  C  L+ +GC
Sbjct: 239 LDTLFNPYALSCGHLFCKGC 258


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.138    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,641,219
Number of Sequences: 37544
Number of extensions: 196484
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 4
length of query: 215
length of database: 14,793,348
effective HSP length: 79
effective length of query: 136
effective length of database: 11,827,372
effective search space: 1608522592
effective search space used: 1608522592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)