GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002792-TA|BGIBMGA002792-PA|IPR008952|Tetraspanin,
IPR000301|CD9/CD37/CD63 antigen
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    38   7e-05
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 18/198 (9%)

Query: 11  GFLLYKLFIYRHFIGVNVE------YPAILLLMMAIITCSIAWIGWRTAVSXXXXXXXXX 64
           G L   + I+   +GV+ +      +P+I L+++  I   I++ G   A+          
Sbjct: 25  GILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITF 84

Query: 65  XXXXXXXXXXEFTCFVWAMVVWDNVEIDVKTTMTQFFEDTRGADANSAESLKWDRLHVKF 124
                     +    V+A +V  N + + +    ++ E   G   NS      D +    
Sbjct: 85  ASFLLFILLVQIAVAVYAFIVVKNDD-NFRNISEKYQEIFNGYFLNSESKDFIDFIQKNL 143

Query: 125 ECCGVTGPNDYATSGHVPFSCCGQGPLDSLHKPYASECAA--LYLRGCGKQLHEYTRQQL 182
           +CCGV   +DY     +P SCC        + P  + C+    Y  GC + L +  +   
Sbjct: 144 QCCGVHSLSDY-NDKPIPASCC--------NSPENNTCSISNSYTNGCVEALKDTVKLAG 194

Query: 183 MLVSMTALCASIIQTYSV 200
            +    A+  +I++   +
Sbjct: 195 TVFGSVAIAIAIVELIGI 212


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 118 DRLHVKFECCGVTGPNDYATSGHVPFSCCG 147
           +++H+     G        T+GH+ + C G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGG 33


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 118 DRLHVKFECCGVTGPNDYATSGHVPFSCCG 147
           +++H+     G        T+GH+ + C G
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGG 33


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 173 QLHEYTRQQLMLVSMTALCASII 195
           Q  EY + Q +L+ M  LC   I
Sbjct: 255 QAEEYKKIQQILIRMNKLCIQTI 277


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.138    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,810
Number of Sequences: 429
Number of extensions: 1823
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)