GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002791-TA|BGIBMGA002791-PA|undefined
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    31   0.55 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    30   1.3  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   6.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    28   6.8  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   9.0  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 529 NLTVAEQSPAVLLTKVLRLLEEGNNMEAKNFLLRALNVHSKNRYLLWIYGALNFDQGTEG 588
           NL V  ++P  L+   L  LEE    EA +  LRA    S   Y  ++        GT  
Sbjct: 402 NLAVMNENPHALMFLGLIRLEEARYEEAYHLFLRAATQKSVISY-KYLADCYYNGTGTSR 460

Query: 589 KDLAAAA-FRIAVRGDYSDGTGIAIGWAALHSFYHYHQNSYAAFVAAKKM 637
             ++A+  ++  V    +  T +AI    +  + ++H NS+  ++ A +M
Sbjct: 461 SMISASLYYKKFVEAIRASATSMAIALEEIDEYGYFH-NSFVYYLYAAQM 509


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/71 (23%), Positives = 37/71 (52%)

Query: 821 YSAFVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTA 880
           ++ + LA+ ++ +GE E AE++   A+   P L + +   A ++ H+ ++  A  +M  A
Sbjct: 381 WTYYFLAQHFDHVGELEKAEKYVDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHA 440

Query: 881 NQVGTVSNDIN 891
            ++      IN
Sbjct: 441 RKLDLQDRFIN 451


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 526 LENNLTVAEQSPAVLLTKVLRLLEEGNNMEAKNFLLRALNVHSKNRYLLWIYGALNFDQG 585
           L    TV+  +  + LT     L+ GN+ +A++ LL A  +  +  ++ ++ G     QG
Sbjct: 694 LRRGKTVSYLNQKLWLTAASLFLKSGNDDQARSALLEAKKIDHECAWVYYLNGLSLLQQG 753

Query: 586 TE 587
            E
Sbjct: 754 KE 755


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 676 FILAAAFFLCLRCYSFVNQIL-VCVERNCVNRGTRFDYTIKIAPDYYYLQAA 726
           F+L ++ FL + C SF +  L VC+E+N + R     YTI+     +Y+  A
Sbjct: 141 FVLFSSDFLMI-CLSFFSYGLQVCIEKNMI-RWANLGYTIQTLWQGFYMVLA 190


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 666 IPASVTAA-NPFILAAAFFLC--LRCYSFVNQILVCVERNCVNRGTRFDYTIKIA 717
           IPA +T A  PF  + A+ L   + CY+ +N I+  +++    R    DY  K A
Sbjct: 461 IPAFITIALMPFTYSIAYGLIAGIICYALLNSIIYAIDKMSRGRLVPADYNQKEA 515


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,124,523
Number of Sequences: 5004
Number of extensions: 173387
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 5
length of query: 921
length of database: 2,362,478
effective HSP length: 79
effective length of query: 842
effective length of database: 1,967,162
effective search space: 1656350404
effective search space used: 1656350404
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)