Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002791-TA|BGIBMGA002791-PA|undefined
(921 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 33 0.79
06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979... 33 1.4
08_02_1616 + 28260204-28262555 32 1.8
01_06_1125 + 34683184-34684776 32 1.8
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 32 2.4
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 31 3.2
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 31 5.6
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 31 5.6
02_03_0298 - 17428616-17428738,17428822-17428992,17429913-174300... 31 5.6
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 31 5.6
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 30 7.4
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734... 30 9.7
>05_07_0059 +
27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 33.5 bits (73), Expect = 0.79
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 137 VPLVLIHNGDRTNCSVIAHLEARGYSENNRVPLMITLLSVHCLPNAKDGTVYLGAIGLDS 196
+P+ + D C ++ L+A GY+ LM LP AKDG LG++G D+
Sbjct: 568 LPITKENKADMGICGILTPLKAFGYTREALEMLM--------LPMAKDGQEALGSMGNDT 619
Query: 197 LTQNVMNFGNSLSFPEAKKIVWADVSN-AAQAANTEFEIPNEDIYFPENVIIPSKTSECN 255
VM+ L+F E K ++A V+N + E + PE + + +C+
Sbjct: 620 -PLAVMSNREKLTF-EYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLSETTERQCH 677
Query: 256 RFYWYSMKRVLIDPNLLQ 273
R ++K L++ N ++
Sbjct: 678 RL---TLKSPLLNTNEME 692
>06_03_0556 -
22097423-22097445,22097579-22097613,22097873-22097941,
22113969-22114807
Length = 321
Score = 32.7 bits (71), Expect = 1.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 623 YHQNSYAAFVAAKKMRKSFE-LAKEWDKFLRRWI-DASGEEEIFWIPA 668
YH+N AFVA++ + L E + WI DASG++E+ W+ A
Sbjct: 254 YHRNITCAFVASEMYAHVIDNLTYEPRWYSLMWIADASGDDEVLWLAA 301
>08_02_1616 + 28260204-28262555
Length = 783
Score = 32.3 bits (70), Expect = 1.8
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 798 GMQSEPAVSLQRAARAHKMV---PSGYSAFVLARIYNILGEKELAERWAAAAVKSEPLLS 854
G V AA AHK + P GY V R + G + A A VK P+L
Sbjct: 625 GATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAIARALVKQAPILL 684
Query: 855 DGWAFLALLALHERKIDNAKA 875
A AL A ER + A A
Sbjct: 685 LDEATSALDAESERSVQEALA 705
>01_06_1125 + 34683184-34684776
Length = 530
Score = 32.3 bits (70), Expect = 1.8
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 767 GWDGQCESALEEADKAGAQPCPAILLRAALG---GMQSEPAVSLQRAARAHKMVPSGYSA 823
G DG+ + AD P A + A +G G ++ A + R
Sbjct: 58 GGDGEEDDPFSFADLQKLPPDVARDVEAVVGAAEGFHADAARARGLLERCGATASEPVVV 117
Query: 824 FVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALLALHERKIDNAKAMM 877
VL R+ N A RWA+A P + LA+LA H R+ D+A+A++
Sbjct: 118 AVLDRLRNSCAAAHAAFRWASAQPGYAPGRHACHSMLAILAKH-RRFDDARALL 170
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 31.9 bits (69), Expect = 2.4
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 171 ITLLSVHCLPNAKDGTVYLGAIGLDSLTQNVMNFGNSLSFPEAKKIVWADVSN-AAQAAN 229
+ L + LP AKDG LG++G D+ VM+ L+F E K ++A V+N
Sbjct: 572 VEALEMLLLPMAKDGVEALGSMGNDT-PLAVMSNREKLTF-EYFKQMFAQVTNPPIDPIR 629
Query: 230 TEFEIPNEDIYFPENVIIPSKTSECNR 256
+ E + PE ++ + +CNR
Sbjct: 630 EKIVTSMECMIGPEGDLLETTEKQCNR 656
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 31.5 bits (68), Expect = 3.2
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 747 RFGPSAILSQINASCLTCSRGW---DGQCESALEEADKAGAQPCPAILLRAALGGMQSEP 803
R GPS L+ A TC W DGQ L D+ GA+P A+ + + L M+ EP
Sbjct: 106 RHGPSLPLATARALLATCV-DWLVTDGQRNVLLMRCDR-GARPALALAMASLLVYMEEEP 163
Query: 804 A 804
A
Sbjct: 164 A 164
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 30.7 bits (66), Expect = 5.6
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 616 ALHSFYHYHQNSYAAFVAAKKMRKSFELAKEWDKFLRRWIDASGEEEIFWIPASVTAANP 675
A+ Y++NS F A +K+ E+A+ L DA G + FW+ A
Sbjct: 360 AIRRLITYYKNSQYYFAAQQKVN---EMARVKGTVL----DAGGSQASFWMQAFTLTKRS 412
Query: 676 FI-LAAAF-FLCLRCYSFVNQILVCVERNCVNRGTRF 710
FI ++ F + LR ++ + VC+ +N GTR+
Sbjct: 413 FINMSRDFGYYWLRLIIYI-VVTVCIGTIYLNVGTRY 448
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 30.7 bits (66), Expect = 5.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 804 AVSLQRAARAHKMVPSGYSAFVLARIYNILGEKELAERWAAAAVKSEPLLSDGWAFLALL 863
A+SL +K+VP +L RIY LG E A+R K+ LLSD ++A+
Sbjct: 364 ALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQRMFEEIDKA-GLLSDEQTYVAMA 422
Query: 864 ALH 866
+H
Sbjct: 423 QVH 425
>02_03_0298 -
17428616-17428738,17428822-17428992,17429913-17430014,
17431654-17431764,17432142-17432228,17432551-17432588,
17432830-17432833,17433280-17433419,17434189-17434320,
17435289-17435354,17435966-17436013,17436055-17436160
Length = 375
Score = 30.7 bits (66), Expect = 5.6
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 715 KIAPDY---YYLQAASLLLRQEYNNAMKITHEGIK 746
K+ PD+ YY Q A+L+L ++Y +A + ++G+K
Sbjct: 315 KLRPDWPKAYYRQGAALMLLKDYESACETLYDGLK 349
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 30.7 bits (66), Expect = 5.6
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 374 PLVPKAKMVSLYERIDFPVTDGSTVPVNELTVEPPPEDQTIDVR--RIRSEGGAL-TVHQ 430
P +A ++ E + V DG PV E+T P PED ++ ++R+ + T+
Sbjct: 317 PTSYEALETAIKETFEKLVEDGKISPVTEITPPPIPEDLKTAIKSGKVRAPTHIISTISD 376
Query: 431 ELSDLACKGTIPMNQGIKR 449
+ + C +PM+ I++
Sbjct: 377 DRGEEPCYAGVPMSTIIEQ 395
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 30.3 bits (65), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 805 VSLQRAARAHKMVPSGYSAFVLARIYNILGEKELAERWAAAAVKSEPL 852
+ + A H++ F+ + Y L +LA +W AAVK++PL
Sbjct: 332 IYFDKDAEDHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPL 379
>02_03_0293 -
17372071-17372217,17372301-17372471,17373334-17373435,
17373803-17374216,17374369-17374512,17374634-17375647
Length = 663
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 715 KIAPDY---YYLQAASLLLRQEYNNAMKITHEGIK 746
K+ PD+ YY Q A+L+L ++Y +A + ++G K
Sbjct: 595 KLRPDWLKAYYRQGAALMLLKDYESACETLYDGFK 629
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,945,366
Number of Sequences: 37544
Number of extensions: 1141100
Number of successful extensions: 2429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2424
Number of HSP's gapped (non-prelim): 14
length of query: 921
length of database: 14,793,348
effective HSP length: 89
effective length of query: 832
effective length of database: 11,451,932
effective search space: 9528007424
effective search space used: 9528007424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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