GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002791-TA|BGIBMGA002791-PA|undefined
         (921 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia compleme...    32   8.1  
BC042083-1|AAH42083.1|  774|Homo sapiens transmembrane and tetra...    32   8.1  
BC020874-1|AAH20874.1|  585|Homo sapiens chromosome 1 open readi...    32   8.1  
AY358629-1|AAQ88992.1|  585|Homo sapiens VCRE3034 protein.             32   8.1  
AL590093-2|CAH71608.1|  585|Homo sapiens novel protein protein.        32   8.1  
AK091901-1|BAC03768.1|  585|Homo sapiens protein ( Homo sapiens ...    32   8.1  
AK055962-1|BAB71057.1|  645|Homo sapiens UBUNIT (EC 2.4.1.-).  p...    32   8.1  
AB046816-1|BAB13422.1| 1151|Homo sapiens KIAA1596 protein protein.     32   8.1  

>DQ140356-1|AAZ53290.1| 2048|Homo sapiens Fanconi anemia
            complementation group M protein.
          Length = 2048

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 845  AAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTANQVGTVSNDINEALESLKAEINLE 904
            +A K+E LLS G++  +L  + ++ +    +   T N    +  +I +  +S K ++NL+
Sbjct: 1313 SAAKNEELLSPGYSQFSL-PVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQ 1371

Query: 905  RTPDYLARNVCYSK 918
            R  + L     YS+
Sbjct: 1372 RFKEALNSTFDYSE 1385


>BC042083-1|AAH42083.1|  774|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 1 protein.
          Length = 774

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 803 PAVSLQRAARAHKMVPSGYSAFV-LARIYNILGEKELAERWAAAAVK 848
           P  ++    +A K+ PS + A V L R+Y  LGE  +AE W   A++
Sbjct: 524 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 570


>BC020874-1|AAH20874.1|  585|Homo sapiens chromosome 1 open reading
           frame 179 protein.
          Length = 585

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 367 IRFDLFEPLVPKAKMVSL-YERIDFPVTDGSTVPVNELTVEPPPEDQTIDVRRI--RSEG 423
           + +D+FEPL+ + K ++L   R     T GS +P+ +L     P D  ++V  +    +G
Sbjct: 297 VYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQL-----PGDDGLNVEWLVPDVQG 351

Query: 424 GALTVHQELSDLACKGTIPMNQGIKRSAANRLLMRVRSLLKQFPAGNCSVID--LQDTVT 481
              T    L D   +G I +N G++ + A   +  V +     P+GN   ++  LQ   T
Sbjct: 352 SGKTATMTLPD--TEGMILLNTGLEGTVAENPVPIVHT-----PSGNILTLESCLQQLAT 404

Query: 482 H 482
           H
Sbjct: 405 H 405


>AY358629-1|AAQ88992.1|  585|Homo sapiens VCRE3034 protein.
          Length = 585

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 367 IRFDLFEPLVPKAKMVSL-YERIDFPVTDGSTVPVNELTVEPPPEDQTIDVRRI--RSEG 423
           + +D+FEPL+ + K ++L   R     T GS +P+ +L     P D  ++V  +    +G
Sbjct: 297 VYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQL-----PGDDGLNVEWLVPDVQG 351

Query: 424 GALTVHQELSDLACKGTIPMNQGIKRSAANRLLMRVRSLLKQFPAGNCSVID--LQDTVT 481
              T    L D   +G I +N G++ + A   +  V +     P+GN   ++  LQ   T
Sbjct: 352 SGKTATMTLPD--TEGMILLNTGLEGTVAENPVPIVHT-----PSGNILTLESCLQQLAT 404

Query: 482 H 482
           H
Sbjct: 405 H 405


>AL590093-2|CAH71608.1|  585|Homo sapiens novel protein protein.
          Length = 585

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 367 IRFDLFEPLVPKAKMVSL-YERIDFPVTDGSTVPVNELTVEPPPEDQTIDVRRI--RSEG 423
           + +D+FEPL+ + K ++L   R     T GS +P+ +L     P D  ++V  +    +G
Sbjct: 297 VYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQL-----PGDDGLNVEWLVPDVQG 351

Query: 424 GALTVHQELSDLACKGTIPMNQGIKRSAANRLLMRVRSLLKQFPAGNCSVID--LQDTVT 481
              T    L D   +G I +N G++ + A   +  V +     P+GN   ++  LQ   T
Sbjct: 352 SGKTATMTLPD--TEGMILLNTGLEGTVAENPVPIVHT-----PSGNILTLESCLQQLAT 404

Query: 482 H 482
           H
Sbjct: 405 H 405


>AK091901-1|BAC03768.1|  585|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34582 fis, clone KIDNE2008649. ).
          Length = 585

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 367 IRFDLFEPLVPKAKMVSL-YERIDFPVTDGSTVPVNELTVEPPPEDQTIDVRRI--RSEG 423
           + +D+FEPL+ + K ++L   R     T GS +P+ +L     P D  ++V  +    +G
Sbjct: 297 VYYDIFEPLLSQFKQLALNATRKPMYYTGGSLIPLLQL-----PGDDGLNVEWLVPDVQG 351

Query: 424 GALTVHQELSDLACKGTIPMNQGIKRSAANRLLMRVRSLLKQFPAGNCSVID--LQDTVT 481
              T    L D   +G I +N G++ + A   +  V +     P+GN   ++  LQ   T
Sbjct: 352 SGKTATMTLPD--TEGMILLNTGLEGTVAENPVPIVHT-----PSGNILTLESCLQQLAT 404

Query: 482 H 482
           H
Sbjct: 405 H 405


>AK055962-1|BAB71057.1|  645|Homo sapiens UBUNIT (EC 2.4.1.-).
           protein.
          Length = 645

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 803 PAVSLQRAARAHKMVPSGYSAFV-LARIYNILGEKELAERWAAAAVK 848
           P  ++    +A K+ PS + A V L R+Y  LGE  +AE W   A++
Sbjct: 395 PEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQ 441


>AB046816-1|BAB13422.1| 1151|Homo sapiens KIAA1596 protein protein.
          Length = 1151

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 845 AAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTANQVGTVSNDINEALESLKAEINLE 904
           +A K+E LLS G++  +L  + ++ +    +   T N    +  +I +  +S K ++NL+
Sbjct: 416 SAAKNEELLSPGYSQFSL-PVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEKVNLQ 474

Query: 905 RTPDYLARNVCYSK 918
           R  + L     YS+
Sbjct: 475 RFKEALNSTFDYSE 488


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,068,029
Number of Sequences: 224733
Number of extensions: 5494858
Number of successful extensions: 9450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9448
Number of HSP's gapped (non-prelim): 10
length of query: 921
length of database: 73,234,838
effective HSP length: 97
effective length of query: 824
effective length of database: 51,435,737
effective search space: 42383047288
effective search space used: 42383047288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 70 (32.3 bits)