GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002791-TA|BGIBMGA002791-PA|undefined
         (921 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical ...    32   1.6  
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    32   2.1  
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    31   3.7  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    31   3.7  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    31   4.9  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    31   4.9  
U41025-4|AAA82349.2|  176|Caenorhabditis elegans Neuropeptide-li...    31   4.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    31   4.9  
AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical ...    31   4.9  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    30   6.5  

>AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical
           protein Y38E10A.8 protein.
          Length = 274

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 299 FMGFVDAGVLLEPGQFGVTVGAQLMYYNESELPENVGPLLDLPPASAKASAREINTVTDE 358
           F G  D   +L  G FG+   AQ    N+ EL       LDL  A+   +ARE+ T+T  
Sbjct: 14  FQGRYDVVDVLGQGSFGIVFQAQRK--NDREL--RAVKRLDLDSATLPRAAREVTTITSI 69

Query: 359 YGHGAY 364
             H  Y
Sbjct: 70  GRHSGY 75


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 828 RIYNILGE-KELAERWAAAAVKSEPLLSDGWAFLALLALHERKIDNAKAMMRTA 880
           ++YN+L +  E AE+  + +V+  P  +D W  L L  +  R ++ A++  + A
Sbjct: 67  KMYNVLEDYNETAEKMLSKSVRMNPKNADAWHELGLCVMKRRDLEFAQSCFKIA 120


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 309 LEPGQFGVTVGAQLMYYNESELPEN-VGPLL---DLPPASAKASAREINTVTDE 358
           +EPG   V    + +++N  +L EN + P +   DLPP +  A A + N   DE
Sbjct: 351 IEPGDCIVCFSKRSIFFNSKKLEENGIKPAVIYGDLPPGTKLAQAAKFNDPDDE 404


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 309 LEPGQFGVTVGAQLMYYNESELPEN-VGPLL---DLPPASAKASAREINTVTDE 358
           +EPG   V    + +++N  +L EN + P +   DLPP +  A A + N   DE
Sbjct: 353 IEPGDCIVCFSKRSIFFNSKKLEENGIKPAVIYGDLPPGTKLAQAAKFNDPDDE 406


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 68  VIEIEYFPVNLNDPDHQLMVADSPIVVILRSVSGKGAKDV 107
           VI+ E + +   DP+H+  + D  I VI R++  KG  +V
Sbjct: 761 VIQDELYSILGADPEHKQALTDDDITVIRRNIETKGVLEV 800


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 603  DYSDGTGIAIGWAALHSFYHYHQNSYAAFVAAKKMRKSFELAKEWDKFLRR 653
            +Y + T +  GW  L +    HQNS +A   +   ++  E A+ WD+ L +
Sbjct: 1446 NYQNKTRLIKGWDDLFNKLKEHQNSLSAMKLSPYYKQFEESAQSWDEKLNK 1496



 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 865 LHERKIDNAK-AMMRTANQVGTVSNDINEALESLKAEINLERTP 907
           LH RK+ + K  + R    V  +S D+N  L  + +  NL RTP
Sbjct: 358 LHLRKLRSTKYPLQRALRLVEAISRDLNSQLLKVLSSYNLMRTP 401


>U41025-4|AAA82349.2|  176|Caenorhabditis elegans Neuropeptide-like
           protein protein 1 protein.
          Length = 176

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 222 SNAAQAANTEFEIPNEDIYFPENVIIPSKTSECNRFYWYSMKRVLIDPN 270
           S+A QAA+ + E  N+D   PE      K  + N F     KRV +DPN
Sbjct: 105 SDAHQAADDQVEYVNDDFSLPE-----QKRMDANAFRMSFGKRVNLDPN 148


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 603  DYSDGTGIAIGWAALHSFYHYHQNSYAAFVAAKKMRKSFELAKEWDKFLRR 653
            +Y + T +  GW  L +    HQNS +A   +   ++  E A+ WD+ L +
Sbjct: 1446 NYQNKTRLIKGWDDLFNKLKEHQNSLSAMKLSPYYKQFEESAQSWDEKLNK 1496



 Score = 29.9 bits (64), Expect = 8.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 865 LHERKIDNAK-AMMRTANQVGTVSNDINEALESLKAEINLERTP 907
           LH RK+ + K  + R    V  +S D+N  L  + +  NL RTP
Sbjct: 358 LHLRKLRSTKYPLQRALRLVEAISRDLNSQLLKVLSSYNLMRTP 401


>AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical
          protein Y40H7A.4a protein.
          Length = 291

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 44 SGEWIFLVFFNGQVVMTTKWYTESVI--EIEYFPVNLNDPDHQLMVADSPIVVILRS 98
          +G ++ LV F   ++    +Y   ++   IE  P + N P+HQL+ +DSPI  + R+
Sbjct: 11 AGYFLILVIF---ILFIANYYRLVILLETIEKLPPDTNYPNHQLLDSDSPIRELRRA 64


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 29/70 (41%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 763 TC-SRGWD---GQCESA----LEEADKAGAQPCPAILLRAA--LGGMQSEPAVSLQRAAR 812
           TC S GWD   GQCE      L E+   GA  C AI   A   L  MQS P V       
Sbjct: 392 TCTSTGWDQKIGQCEPVGIRRLSESASTGAV-CAAIANPANGNLLYMQSNPTVQYSSGTS 450

Query: 813 AHKMVPSGYS 822
           A+ M   GYS
Sbjct: 451 AYLMCNLGYS 460


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,936
Number of Sequences: 27539
Number of extensions: 938267
Number of successful extensions: 2113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2106
Number of HSP's gapped (non-prelim): 14
length of query: 921
length of database: 12,573,161
effective HSP length: 88
effective length of query: 833
effective length of database: 10,149,729
effective search space: 8454724257
effective search space used: 8454724257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)