GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002790-TA|BGIBMGA002790-PA|IPR000555|Mov34/MPN/PAD-1,
IPR003639|Mov34-1
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...   251   1e-67
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...   132   5e-32
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    49   1e-06
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    38   0.003
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    31   0.18 

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score =  251 bits (614), Expect = 1e-67
 Identities = 112/245 (45%), Positives = 162/245 (66%), Gaps = 6/245 (2%)

Query: 27  SNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLL 86
           + +++++R+D+++++  +   PW+ DP FF+ +KISA+ALLKM+ H   G  LEVMG + 
Sbjct: 3   NQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQ 62

Query: 87  GKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPG 146
           GKV+  ++I++DSFALPVEGTETRVNA  +A EY   Y    K V RHEN IGWYHSHP 
Sbjct: 63  GKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPN 122

Query: 147 YGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGAFRTYPKG-----YKPAN 201
           YGCWLSG+DV TQ  NQ +Q+PFVA+V+DP R++ +  V +GAFRTYP G        + 
Sbjct: 123 YGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFRTYPVGNDGSIRTKSR 182

Query: 202 EEPSE-YQTIPLNKIEDFGVHCKQYYSLEVSYFKXXXXXXXXXXXWNKYWVNTLSSSSLI 260
             PS  ++ +P +KIED G H + YYSL ++YF             N+ W  +++  S++
Sbjct: 183 HHPSVLFKNLPSSKIEDAGAHAEAYYSLPITYFHSKAEKKVTEFLRNRNWSRSITECSIL 242

Query: 261 TNADY 265
            N ++
Sbjct: 243 QNNEF 247


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score =  132 bits (320), Expect = 5e-32
 Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 11/228 (4%)

Query: 59  IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 117
           + IS+LALLKM+ H R G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 30  VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89

Query: 118 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 177
           ++     ++  KQ GR E  +GWYHSHPG+GCWLS +D++TQ   +      VA+V+DP+
Sbjct: 90  FQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPI 147

Query: 178 RTISAGKVCLGAFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHC------KQYYSLEVS 231
           +++  GKV + AFR          +EP +  T  L  I    +        + YYSL ++
Sbjct: 148 QSVK-GKVVIDAFRLINPSTLMMGQEPRQ-TTSNLGHINKPSIQALIHGLGRHYYSLRIN 205

Query: 232 YFKXXXXXXXXXXXWNKYWVNTLSSSSLITNADYTTGQIFDLSDKLEQ 279
           Y K             + W + L   +  + A+     I  +    EQ
Sbjct: 206 YKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQ 253


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 57  KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 113
           + + +  L LL  V  + RS  G    V+G+LLG+ + + + V +S+A+P E  E   + 
Sbjct: 15  QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74

Query: 114 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 145
               + +M +  E  K++  +E  +GWYH+ P
Sbjct: 75  WFLDHNFMESMNEMFKKINANEKLVGWYHTGP 106


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 79  LEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA--QAQAYEYMTAYIEAAKQVGRHEN 136
           LE  G+L GK+  N   +        E T        +A  +E+   +         +  
Sbjct: 285 LETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKH---------NLL 335

Query: 137 AIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTIS 181
            +GW H+HP   C++S +D+ T    Q      +AIV+ P +  S
Sbjct: 336 TLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTS 380


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 122 TAYIEAAKQVGRHENAIGWYHSHPG-YGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTI 180
           T  +E   Q+G HE   G Y  + G +  +  G+D++T+        P +++ ID  + I
Sbjct: 54  TRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEGKAI 113

Query: 181 SAGK 184
           +  K
Sbjct: 114 APKK 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,800
Number of Sequences: 5004
Number of extensions: 58205
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 5
length of query: 348
length of database: 2,362,478
effective HSP length: 73
effective length of query: 275
effective length of database: 1,997,186
effective search space: 549226150
effective search space used: 549226150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)