GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002790-TA|BGIBMGA002790-PA|IPR000555|Mov34/MPN/PAD-1,
IPR003639|Mov34-1
         (348 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...   394   e-110
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...   139   2e-33
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...   138   4e-33
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    39   0.005
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    33   0.30 

>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score =  394 bits (969), Expect = e-110
 Identities = 191/339 (56%), Positives = 238/339 (70%), Gaps = 9/339 (2%)

Query: 10  ASIAQKTWVMANNIETVSNVDDIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKM 69
           +S+ Q+ W   NN++   NVD I+ Y+ KQQ +I  AKPW+KDPH+FK IKISA+ALLKM
Sbjct: 10  SSVPQRNWEKENNVQ---NVDSIFEYNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKM 66

Query: 70  VMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAK 129
            MHA+ GG LE+MGLL G++DAN+ I++D FALPVEGTETRVNAQAQAYEYMT Y E   
Sbjct: 67  TMHAKRGGNLEIMGLLQGRIDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCD 126

Query: 130 QVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGA 189
             GR E  +GWYHSHPGYGCWLSGIDVSTQ LNQ FQEP+VAIVIDP+RT+SAGKV +GA
Sbjct: 127 TEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGA 186

Query: 190 FRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLEVSYFKXXXXXXXXXXXWNKY 249
           FRTYP+GY+P ++ PSEYQ+IPL KIEDFGVHCK+YYSL+VS+FK           WN Y
Sbjct: 187 FRTYPEGYRPPDDVPSEYQSIPLAKIEDFGVHCKRYYSLDVSFFKSQLDAHILTSLWNSY 246

Query: 250 WVNTLSSSSLITNADYTTGQIFDLSDKLEQSEVCLGRGAFVVAGADPHEKRTEDKLGKAT 309
           W++TLSSS L +N ++   QI D++ KL   +  L      V G +   K   D   KA 
Sbjct: 247 WISTLSSSPLFSNVEFLNNQIQDINQKLSAVDKKLQLNDRSVDGHEALMKVVTD--AKAV 304

Query: 310 KDACKTTIEVIHGLMAQMIKDRLFNSVCG--RQAAPTPM 346
            D  +T   + H L+ Q++  R     CG    +A +PM
Sbjct: 305 GDELETG-RISH-LVKQLLFARQAGGGCGCSHASAGSPM 341


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score =  139 bits (337), Expect = 2e-33
 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 11/181 (6%)

Query: 59  IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 117
           + IS+LALLKM+ H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 33  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92

Query: 118 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 177
           ++     ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP+
Sbjct: 93  FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150

Query: 178 RTISAGKVCLGAFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHC------KQYYSLEVS 231
           +++  GKV + AFRT        N+EP +  T  L  ++   +        + YYS+ ++
Sbjct: 151 QSVK-GKVVIDAFRTINPQSMALNQEPRQ-TTSNLGHLQKPSIQALIHGLNRHYYSIPIA 208

Query: 232 Y 232
           Y
Sbjct: 209 Y 209


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score =  138 bits (335), Expect = 4e-33
 Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 4/141 (2%)

Query: 53  PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 111
           P   + + IS+LALLKM+ HARSG  LEVMGL+LG  VD  T+ V D FA+P  GT   V
Sbjct: 23  PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82

Query: 112 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVA 171
            +    Y+  T +++  K VGR EN +GWYHSHPG+GCWLS +DV+TQ   +      VA
Sbjct: 83  ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140

Query: 172 IVIDPVRTISAGKVCLGAFRT 192
           +V+DP++++  GKV L AFR+
Sbjct: 141 VVVDPIQSVK-GKVMLDAFRS 160


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 59  IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 113
           + +  L LL +V H    +++     V+G+LLG +  + T+ + +SFA+P +  +   + 
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 114 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 145
                +Y+ +      +V   E  +GWYH+ P
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 73  ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 132
           A++ G  + MG L+G  +  ++ V + FA+P   +   +    Q  + M   I A K+  
Sbjct: 29  AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85

Query: 133 RHENAIGWY 141
            +E  +GW+
Sbjct: 86  PNEQPVGWF 94


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,050
Number of Sequences: 27539
Number of extensions: 310069
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 5
length of query: 348
length of database: 12,573,161
effective HSP length: 82
effective length of query: 266
effective length of database: 10,314,963
effective search space: 2743780158
effective search space used: 2743780158
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)