GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002790-TA|BGIBMGA002790-PA|IPR000555|Mov34/MPN/PAD-1,
IPR003639|Mov34-1
         (348 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 178 RTISAGKVCLGAFRTYP-KGYKPANEE 203
           +T+ +G+VCLG+    P  G +P ++E
Sbjct: 37  KTLCSGQVCLGSVMQLPIHGTEPRSKE 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 276 KLEQSEVCLGRGAFVVAGADPHEKRTEDKLGKATKDACKTTIEVIHGLM 324
           KLEQS +C        + +  HE    D      ++   +T+++ H ++
Sbjct: 205 KLEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKML 253


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,877
Number of Sequences: 429
Number of extensions: 3432
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 348
length of database: 140,377
effective HSP length: 58
effective length of query: 290
effective length of database: 115,495
effective search space: 33493550
effective search space used: 33493550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)