Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002789-TA|BGIBMGA002789-PA|IPR001781|LIM, zinc-binding
(90 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 46 3e-06
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 43 3e-05
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 34 0.016
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 31 0.086
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 30 0.26
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 0.60
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 1.1
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 28 1.1
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 28 1.1
01_05_0739 + 24807181-24809121 28 1.1
08_02_0126 + 12835431-12838183,12838471-12838566,12838920-128389... 27 1.4
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 27 1.4
03_06_0750 - 35979783-35980061 27 2.4
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 26 3.2
04_04_1322 + 32640414-32642327 26 3.2
07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989... 26 4.3
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 26 4.3
12_02_1178 + 26718283-26719368 25 5.6
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 25 5.6
02_04_0335 + 22117902-22119869 25 5.6
09_03_0178 + 13127669-13127741,13127831-13128173,13128308-131283... 25 7.4
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 25 7.4
03_02_1016 + 13228113-13228964 25 7.4
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 25 7.4
02_05_0349 - 28172347-28172521,28172672-28172817 25 7.4
07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848... 25 9.8
06_03_0431 + 20713186-20713977 25 9.8
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 25 9.8
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985... 25 9.8
02_04_0456 - 23089507-23090607,23091561-23091635 25 9.8
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 25 9.8
02_01_0130 - 938530-939990 25 9.8
01_06_0935 - 33170480-33170709,33170889-33171003 25 9.8
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPIA-GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
CAGC PI GR ++ M +HP+ F C C + +++ F D+PY +C+ F
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFF 313
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPIA-GRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
CAGCH I GR ++ M +HPE F C C + + F + PY C+ + F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF 614
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 33.9 bits (74), Expect = 0.016
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 LCAGCHKPIA-GRCITAMFRKFHPEHFVCAFCLRQLNK 69
+CAGC PI GR ++ M +HP+ F C C R +++
Sbjct: 177 VCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 31.5 bits (68), Expect = 0.086
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 53 FHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
FH F C C L+ G + PYC F++LF
Sbjct: 29 FHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLF 65
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 4 CREPFHGGSFFEHEGQPYCETHY 26
C+ G++ EG PYC+ H+
Sbjct: 39 CKSTLSLGNYSSIEGVPYCKPHF 61
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 16 HEGQPYCETHYHGKRGSLCAGCHKPIAGR 44
H G YC H GKR S+ AGC K GR
Sbjct: 519 HGGTEYCVAHGGGKRCSV-AGCTKSARGR 546
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPI-AGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
C C K + +TA R +H F C C L + YC FD+LF
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLF 68
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 33 LCAGCHKPIAGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKL 88
LC+ C K + C T + +C C++Q F + +K +C C+ +
Sbjct: 198 LCSTCEKAVQYMCYTCTYS-------LCKGCIKQKPVKFFGVRGNKGFCDTCYSTI 246
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPIAG-RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
C C K + +TA +H F C+ C L+ ++ + YC F++LF
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFEQLF 66
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPIAG-RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
C C K + +TA +H F C+ C L+ + + YC F++LF
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLF 66
>01_05_0739 + 24807181-24809121
Length = 646
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 16 HEGQPYCETHYHGKRGSLCAGCHKPIAGR 44
H G YC H GKR ++ +GC K GR
Sbjct: 451 HGGTQYCVAHGGGKRCAI-SGCTKSARGR 478
>08_02_0126 +
12835431-12838183,12838471-12838566,12838920-12838971,
12839198-12839298,12839349-12839370
Length = 1007
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 14 FEHEGQPYCETHYHGKRGSLCAGC--HKPIAGRCI--TAMFRKFHPEHFVCAFCLRQLNK 69
F+H CE H +G + +CA C H+ R + R ++P+ V A + L +
Sbjct: 822 FKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLR 881
Query: 70 GTFKE 74
+K+
Sbjct: 882 DGYKD 886
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 34 CAGCHKPIAG-RCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPYCHACFDKLF 89
C C K + +TA +H F C+ C L+ ++ + YC F++LF
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQLF 66
>03_06_0750 - 35979783-35980061
Length = 92
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 29 KRGSLCAGCHKPIAGRCITAMFRKFHPEHFVC 60
++ LC C A T + +FHP +FVC
Sbjct: 11 EKEKLCRRCKATYAPSGNTRLSCRFHPSYFVC 42
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 20 PYCETHYHGKRGSLCAGCHKPIAGRCITAMFRKFH 54
PYC YH K G H P +C +F H
Sbjct: 269 PYCRVRYHLKEFRGPQGPHGPQGPKCPKELFNYRH 303
>04_04_1322 + 32640414-32642327
Length = 637
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 16 HEGQPYCETHYHGKRGSLCAGCHKPIAGR 44
H G +C H GKR S+ GC K GR
Sbjct: 424 HGGTSFCVAHGGGKRCSV-PGCTKSARGR 451
>07_01_1100 +
10097044-10097949,10098074-10098274,10098796-10098991,
10099697-10099881
Length = 495
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 65 RQLNKGTFKEQNDKPYCHACFDKL 88
R L F+E+N + C AC+D+L
Sbjct: 223 RCLLPAKFRERNPQRVCDACYDRL 246
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 28 GKRGSLCAGCHKPIAGRCITAMFRKFHPEHFVCAFCLRQLN-KGTFKEQNDKPY--CHAC 84
G S+C+GC +P R ++ C C + + K + +KPY C +C
Sbjct: 654 GSDQSMCSGCRQPFNLR--RKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSC 711
Query: 85 FDKL 88
+ KL
Sbjct: 712 YSKL 715
>12_02_1178 + 26718283-26719368
Length = 361
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 7 PFHGGSFFEHEGQPYCETHYHGKRGSLCAGCHKPIAG 43
PFHG FF+ E + HG ++CA C P G
Sbjct: 220 PFHGQGFFDAELDAWVGLPRHG--DTICA-CQVPSRG 253
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 22 CETHYHGKRGSLCAGCHKPIAGRCITAMFRKFHPEHFVCAFCL 64
C + HG+ LC C K C++ P ++ C+ C+
Sbjct: 262 CNSGLHGEVMLLCDRCDKGWHLYCLSPPLESVPPGNWYCSECM 304
>02_04_0335 + 22117902-22119869
Length = 655
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 21 YCETHYHGKRGSLCAGCHKPIAGR 44
+C+ H GKR + GC K GR
Sbjct: 507 FCKAHGGGKRCTWATGCEKFARGR 530
>09_03_0178 +
13127669-13127741,13127831-13128173,13128308-13128376,
13129706-13129844,13130010-13130021
Length = 211
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 34 CAGCHKPIAGRCITAMFRKFHP-EHFVCAFCLRQLNKGTFKEQNDKP 79
C GC C+ + +HF+CA C+++ GT + N P
Sbjct: 156 CEGCKDWFHPSCMGMTIEQAKKLDHFLCADCVKE--NGTKRPSNSYP 200
>06_03_0022 -
15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 21 YCETHYHGKRGSLCAGCHKPIAG 43
YC+ H G +G + GC K G
Sbjct: 238 YCKIHRGGSKGCMVQGCTKGAHG 260
>03_02_1016 + 13228113-13228964
Length = 283
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 9 HGGSFFEHEGQPYCETHYHGKRGSLCAGCH 38
HG H QP THY+ G LCA H
Sbjct: 254 HGHDALMH--QPAVITHYNYMHGHLCAPYH 281
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 20 PYCETHYHGKRGSLCAGCH--KPIAGRCITAM 49
PY + HYHG +G H P++ +T +
Sbjct: 286 PYYQYHYHGAQGLGVPAAHFFPPVSAAAVTTV 317
>02_05_0349 - 28172347-28172521,28172672-28172817
Length = 106
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 12 SFFEHEGQPYCETHYHGKRGSLCAGCHKPIAGRCITAMFR 51
SFF+ E E G C+ C KP+ C M+R
Sbjct: 10 SFFDIEPLDGGEACLSGHAMDACSLCRKPLTRNCDIFMYR 49
>07_03_1275 +
25382959-25383765,25383850-25384050,25384693-25384888,
25385583-25385767
Length = 462
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 32 SLCAGCHKPIAGRCITAMFRKFHPEHFVCAFCLRQLNKGT------FKEQNDKPYCHACF 85
S+C C P TA+ R H F + +KG F++++ + C AC+
Sbjct: 156 SVCLQCSLPF-----TALTRGRHHCRFCGGIFCKDCSKGRCLMPMKFRQRDPQRVCDACY 210
Query: 86 DKL 88
D+L
Sbjct: 211 DRL 213
>06_03_0431 + 20713186-20713977
Length = 263
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 34 CAGCHKPIAGRCITAMFRKFHPEHFVCAFCLRQLNKGTFKEQNDKPY 80
CA C + G C R C C + + + +EQ +PY
Sbjct: 188 CAMCRNSVHGECFARWKRSRGRRAATCVVCRARWRQPS-REQEKEPY 233
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 19 QPYCETHYHGKRGSLCAGCHK 39
+P C H +GS GCH+
Sbjct: 371 EPMCVVSIHNLQGSCFGGCHE 391
>05_06_0279 +
26896997-26897457,26898100-26898220,26898310-26898586,
26898735-26898895
Length = 339
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 19 QPYCETHYHGKRGSLCAGCHK 39
+P C H +GS GCH+
Sbjct: 271 EPMCVVSIHNLQGSCFGGCHE 291
>02_04_0456 - 23089507-23090607,23091561-23091635
Length = 391
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 35 AGCHKPIAGRCITAMFRK----FHPEHFVCAFCLRQLNKGTFKEQ 75
A H+ AG+ A FR+ + C+FC R +N FK Q
Sbjct: 265 ASIHRYRAGKTRYAHFRQTDDLLADSGWHCSFCFRHINDFVFKMQ 309
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 9 HGGSF-FEHEGQPYCETHYHGKRGS 32
HGG EH G PY E+ + G G+
Sbjct: 55 HGGGLRTEHSGGPYGESIFWGSAGA 79
>02_01_0130 - 938530-939990
Length = 486
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 2 LECREPFHGGSFFEHEGQPYCETHYH 27
+ C EP +GGS E E E YH
Sbjct: 38 ISCTEPSNGGSVMELEVMDRNEQTYH 63
>01_06_0935 - 33170480-33170709,33170889-33171003
Length = 114
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 6 EPFHGGSFFEHEGQPYCETHYHGKRGSLCAGCHKPIAGRCITAMFRKFH 54
E FHG H P H +C G H AG ++ R+FH
Sbjct: 32 EKFHGDGADHHYVAP---EHATTPLPLICTGVHGVEAGETCDSIARRFH 77
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.145 0.528
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,083
Number of Sequences: 37544
Number of extensions: 126961
Number of successful extensions: 259
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 43
length of query: 90
length of database: 14,793,348
effective HSP length: 69
effective length of query: 21
effective length of database: 12,202,812
effective search space: 256259052
effective search space used: 256259052
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)
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