GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002789-TA|BGIBMGA002789-PA|IPR001781|LIM, zinc-binding
         (90 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    30   0.004
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   9.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.004
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 14  FEHEGQPYCETHYH-GKRGSLCAGCHKPI--AGRCITAMFRKFHPEHFVCAFC------L 64
           FEH G+ +     H G+R   C  C K    +G+ +  M      + +VC  C       
Sbjct: 157 FEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCS 216

Query: 65  RQLNKGTFKEQNDKPY-CHACFDKLFG 90
           +QL   T     +KPY C  C  K FG
Sbjct: 217 KQLKVHTRTHTGEKPYTCDIC-GKSFG 242


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 21  YCETHYHGKRGSLCAGCHKPIA 42
           Y  T    +RG L AGCH  +A
Sbjct: 308 YGGTSVMHQRGKLSAGCHILVA 329


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 2/16 (12%)

Query: 49   MFRKFHPEHFVCAFCL 64
            +FRK  PEHFV ++ L
Sbjct: 1616 LFRK--PEHFVASYAL 1629


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 23  ETHYHGKRGSLCAGCHK 39
           + H+     ++CA CHK
Sbjct: 393 QQHFQPLNSAVCALCHK 409


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 21  YCETHYHGKRGSLCAGCHKPIAGRCITAMFRKFHPEHFVCAFCLRQLNKGTF 72
           Y   H+ G++G    G    I        F + +     C     +LN  TF
Sbjct: 284 YYAFHFEGEKGPNSQGPSSVIDTNTGVDYFTQINRNGIACWDTNTELNPNTF 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.145    0.528 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,503
Number of Sequences: 429
Number of extensions: 1066
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space:  5030970
effective search space used:  5030970
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.4 bits)
S2: 37 (19.0 bits)