Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002788-TA|BGIBMGA002788-PA|IPR001781|LIM, zinc-binding
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 54 2e-07
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 50 2e-06
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 49 6e-06
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 46 4e-05
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 45 1e-04
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 44 1e-04
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 44 1e-04
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 42 5e-04
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 42 7e-04
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 41 0.001
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 31 0.95
04_04_0975 + 29836451-29837032 31 1.7
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 30 2.9
04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246... 30 2.9
11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754 29 3.8
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 29 5.1
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 205 SPRCAYCNGPI-LDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFDMF 263
S CA C PI + ++ ++ WH + F C C + E F + +PY ++ Y D F
Sbjct: 254 SRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFF 313
Query: 264 APKCGGCNKPIMENYISALNTQWHP 288
PKC C I N + + HP
Sbjct: 314 HPKCDVCKNFIPTNRNGLIEYRAHP 338
Score = 53.2 bits (122), Expect = 3e-07
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 74 SATKELDDLMA-SLSDFKVSGTGGDSGTHVYREK---RAWQEQYRTNPRQPESASLEHML 129
S +++D +A SLS+ + G D ++ ++ RA QE + ++ +E++
Sbjct: 178 SDNEDIDRAIALSLSEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVP 237
Query: 130 GSLRADMSRQGVQTPQKGCCNACEKPIV-GQVITALGRTWHPEHFTCAHCNQELGTRNFF 188
++ + C C+ PI G+ ++ + WHP+ F C CN+ + F
Sbjct: 238 SEPPRELPPILFASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFA 297
Query: 189 ERDGRPYCEPDYHNLFSPRCAYC 211
+ +PY + Y + F P+C C
Sbjct: 298 MHEDQPYHKSCYKDFFHPKCDVC 320
Score = 47.2 bits (107), Expect = 2e-05
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 267 CGGCNKPIMEN-YISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTC 317
C GC PI ++S +++ WHP CF C C P+ F E +P +C
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSC 308
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 149 CNACEKPIV-GQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C C I G+ ++ +G WHPE F C CNQ + F PY + Y F P+
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPK 617
Query: 208 CAYC 211
C C
Sbjct: 618 CDVC 621
Score = 47.2 bits (107), Expect = 2e-05
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 208 CAYCNGPI-LDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFDMFAPK 266
CA C+ I + ++ + WH E F C C Q + F PY + Y + F PK
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPK 617
Query: 267 CGGCNKPIMENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTCVGVDDDE 324
C C + I N + + HP ++ K C + + ++G P C +C ++ E
Sbjct: 618 CDVCKQFIPTNMNGLIEYRAHP-FWLQKYCPS-------HEVDGTPRCCSCERMEPRE 667
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 48.8 bits (111), Expect = 6e-06
Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 23/168 (13%)
Query: 149 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C AC+K + + +TA R +H F C HC L N+ +G YC P + LF
Sbjct: 12 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLFKRT 71
Query: 208 CAYCNGPILDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFDMFAPKC 267
+ V EKT E+ + F G E+ C
Sbjct: 72 GSLDKSFEGTPKVVKPEKTVENEN--AIKVSSAFA--GTREK-----------------C 110
Query: 268 GGCNKPIME-NYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 314
GCNK + ++ NT +H CF C + ++ A EGK C
Sbjct: 111 VGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
Score = 34.7 bits (76), Expect = 0.10
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 257 ADYFDMFAPKCGGCNKPI-MENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 314
A F KC C+K + + + ++A N +H CF C C+ +K ++ + EG C
Sbjct: 2 ATSFQGTTTKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYC 60
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 149 CNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C C K + + +T +H F C H + N+ +G+ YC+ + L +
Sbjct: 110 CVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEK 169
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 207 RCAYCNGPI--LDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFDMFA 264
+C C+ + +DK +TA + +H F C C ++ +G YCR +FD
Sbjct: 11 KCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCR-PHFDQLF 68
Query: 265 PKCGGCNK 272
+ G +K
Sbjct: 69 KRTGSLDK 76
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 46.0 bits (104), Expect = 4e-05
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 267 CGGCNKPIME-NYISALNTQWHPDCFVCKDCQNPVK 301
CGGC I +Y+S L WHP CF C C++P++
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIR 149
Score = 35.1 bits (77), Expect = 0.077
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 175 CAHCNQELGTRNFFERDGRPYCEPDYHNLFSPRCAYCNGPILDKCVTALEKTWHTEHFFC 234
C C E+G ++ G Y P RC+ C PI + VT L+ + F
Sbjct: 114 CGGCKHEIGHGHYLSCLGM-YWHPQCF-----RCSSCRHPIREMEVTFLQFSLECLKVFS 167
Query: 235 AQCGQQFGEEGFHERDGKPYCRADYFDMFAPKCGGCNKPIMENYISALNTQWHP 288
+ F PY + Y ++ PKC C + I N + + HP
Sbjct: 168 GSDSLLYSVSQFTLLGTDPYHKLCYKELHHPKCDVCLQFIPTNRTGLIEYRAHP 221
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 149 CNACEKPIV-GQVITALGRTWHPEHFTCAHCNQEL 182
C C+ I G ++ LG WHP+ F C+ C +
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPI 148
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 149 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLF 204
C AC+K + ++TA G ++H F C+HC L N+ DG YC+ + LF
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLF 66
Score = 37.1 bits (82), Expect = 0.019
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 149 CNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C AC+K + + +T G ++H F C+H L T ++ +G YC+ + LF +
Sbjct: 106 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLFKEK 165
Query: 208 CAY 210
+Y
Sbjct: 166 GSY 168
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 266 KCGGCNKPI-MENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 316
KC C+K + + ++A +H CF C C+ + ++ +M+G C T
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 60
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 44.4 bits (100), Expect = 1e-04
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 143 TPQKGCCNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYH 201
T QK C++C + + + + A GR +H F C HC L N+ +G YC+P Y
Sbjct: 9 TTQK--CDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYD 66
Query: 202 NLFSPRCAYCNGPILDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFD 261
+ K +LEK++ + E + G+P + F
Sbjct: 67 QIL-------------KSTGSLEKSFE-------GTSKSAKAEKSNGNKGQPNRFSSMFV 106
Query: 262 MFAPKCGGCNKPIME-NYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 316
KC CNK + ++ + +H CF C + + EGK C T
Sbjct: 107 GTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKT 162
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 149 CNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C C K + + + G ++H F C H L N +G+ YC+ + LF +
Sbjct: 112 CVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLFMVK 171
Query: 208 CAYCN 212
+ N
Sbjct: 172 GNFSN 176
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 143 TPQKGCCNACEKPIVGQ-VITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYH 201
T QK C C K + ++ G +H F C HC L N+ +G PYC+P +
Sbjct: 5 TQQK--CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFE 62
Query: 202 NLFSPRCAY 210
LF +Y
Sbjct: 63 QLFKETGSY 71
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 102 VYREKRAWQEQYRTNPRQPESASLEHMLGSLRADMSRQGVQTPQKGCCNACEKPIVG-QV 160
+++E ++ + +++ P +P S L L + +R T +K C C K +
Sbjct: 64 LFKETGSYNKSFQS-PAKPASEKLTPELTRSPSKAARMFSGTQEK--CATCSKTAYPLEK 120
Query: 161 ITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPRCAY 210
+T G+ +H F C+H + N+ +G YC+ + LF + +Y
Sbjct: 121 VTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSY 170
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 266 KCGGCNKPIME-NYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVC 314
KC C K + + +S +H CF C+ C++ + ++ ++EG P C
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYC 57
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 42.3 bits (95), Expect = 5e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 149 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLF 204
CNAC+K + ++TA +H F C+HC L ++ DG YC+ + LF
Sbjct: 10 CNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFEQLF 66
Score = 38.3 bits (85), Expect = 0.008
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 149 CNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C AC+K + + +T G +H F CAH L ++ +G YC+ + LF
Sbjct: 104 CTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQNHFWQLFKKS 163
Query: 208 CAYCNGPILDKCVTALEKTWHTE 230
+Y N +L A E T +E
Sbjct: 164 GSYDN--LLKPASAAAENTVESE 184
Score = 35.5 bits (78), Expect = 0.058
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 266 KCGGCNKPI-MENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 316
KC C+K + + ++A + +H CF C C+ + S+ +M+G C T
Sbjct: 9 KCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 60
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 41.9 bits (94), Expect = 7e-04
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 267 CGGCNKPIMEN-YISALNTQWHPDCFVCKDCQNPV 300
C GC PI + ++S +++ WHP CF C C P+
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPI 212
Score = 32.7 bits (71), Expect = 0.41
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 208 CAYCNGPI-LDKCVTALEKTWHTEHFFCAQCGQQFGE-EGFHERDGKPYCRADYFDMFAP 265
CA C PI + ++ ++ WH + F C C + E E +DG RA F
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEIPTNKDGHIEYRAHPF----- 232
Query: 266 KCGGCNKPIMENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTCVG---VDD 322
M+ Y A T P C C+ + P K +G+ +C C+ +D
Sbjct: 233 --------WMQKYCPAHETDRTPRCCSCERME-PKDSKYITLDDGRKLCLECLNTSIMDT 283
Query: 323 DE 324
DE
Sbjct: 284 DE 285
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 149 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNF-FERDG-----------RPY 195
C C+ PI G+ ++ + WHP+ F C C++ + +DG + Y
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEIPTNKDGHIEYRAHPFWMQKY 237
Query: 196 CEPDYHNLFSPRCAYC 211
C P + +PRC C
Sbjct: 238 C-PAHETDRTPRCCSC 252
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 149 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLF 204
C AC+K + ++TA G +H F C+HC L ++ DG YC+ + LF
Sbjct: 10 CTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQLF 66
Score = 36.3 bits (80), Expect = 0.033
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 149 CNACEKPIVG-QVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 207
C AC+K + + +T G ++H F C+H L T ++ +G YC+ + LF +
Sbjct: 105 CAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEK 164
Query: 208 CAY 210
+Y
Sbjct: 165 GSY 167
Score = 33.9 bits (74), Expect = 0.18
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 266 KCGGCNKPI-MENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPT 316
KC C+K + + ++A +H CF C C+ + S+ +M+G C T
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 77 KELDDLMASLSDFKVSGTGGDSGTHVYREKRAWQEQYRTNPRQPESASLEHMLGSLRADM 136
+E D+L A+ + SG+G SG+ R RAW Y + + S+R
Sbjct: 852 RERDELRAAEAAAAASGSGSGSGSRSLRRLRAWARHYDQKDLKSPTFKRRWSDESVRNGS 911
Query: 137 SRQGVQTPQKGCCNAC 152
+TP+ G + C
Sbjct: 912 EYAASRTPRWGDESPC 927
>04_04_0975 + 29836451-29837032
Length = 193
Score = 30.7 bits (66), Expect = 1.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 153 EKPIVGQVITALGRTWHPEHFTCAHCNQE 181
++ + + LG TW P +TCA C +E
Sbjct: 51 DEQLAADDVDGLGGTWPPRSYTCAFCRRE 79
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 72 ASSATKELDDLMASLSDFKVSGTGGDSGTHVYREKRAWQE 111
+SSA E D+L+A+LS +S +G SG + +Q+
Sbjct: 250 SSSAIGESDNLIAALSGMNLSSSGAASGQQTVTQSELYQD 289
>04_01_0204 +
2467657-2467781,2467955-2468044,2469071-2469169,
2469353-2469371,2469965-2470021,2470585-2471265,
2471639-2471742,2471919-2472057,2472173-2472334,
2472565-2472681
Length = 530
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 213 GPILDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYCRADYFD 261
G +D C + WH A CG FG RDGK Y D D
Sbjct: 162 GNPIDDCWRC-DPDWHKNRQRLADCGIGFGRNAIGGRDGKIYVVTDPSD 209
>11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754
Length = 310
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 137 SRQGVQTPQKGCCNACEKPIVGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYC 196
SR GV +P K C C KP ++ + C C RN+F D
Sbjct: 77 SRDGVGSPMKPTCFLCFKPYRSDLM----------YIRCESC------RNWFHGDALELE 120
Query: 197 EPDYHNLFSPRCAYCNGPILDKC 219
E L S RC C L KC
Sbjct: 121 EGRIAQLISYRCCRCRRRPLPKC 143
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 29.1 bits (62), Expect = 5.1
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 6/126 (4%)
Query: 171 EHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPRCAYCNGPILDKCVTALEKTWHTE 230
E F C HC+ E T+N + D E H + C+ C G + +
Sbjct: 74 EIFDCRHCHNE--TKNSIKIDAVKRHELPRHEVQQVICSLC-GTEQEVRQVCISCGVCMG 130
Query: 231 HFFCAQCGQQFGEEGFHERDGKPYCR---ADYFDMFAPKCGGCNKPIMENYISALNTQWH 287
+FC C + G H R ++ M G C +++N + + H
Sbjct: 131 KYFCEVCKLFDDDIGKHNDTSFYNVRFQNSNIIAMVVEYAGCCYSIVLKNSHACVEGAMH 190
Query: 288 PDCFVC 293
DC +C
Sbjct: 191 HDCPIC 196
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.457
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,661,195
Number of Sequences: 37544
Number of extensions: 419578
Number of successful extensions: 857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 52
length of query: 324
length of database: 14,793,348
effective HSP length: 82
effective length of query: 242
effective length of database: 11,714,740
effective search space: 2834967080
effective search space used: 2834967080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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