GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002788-TA|BGIBMGA002788-PA|IPR001781|LIM, zinc-binding
         (324 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    26   1.6  
DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.       25   2.2  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   2.2  
DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    25   3.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   3.8  
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    24   5.0  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    23   8.8  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 191 DGRPYCEPDYHNLFSPRCAYCNGPILDKCV 220
           DGR YCE D  +   P    C+GP   +CV
Sbjct: 584 DGR-YCECDNFSCDRPGGLLCSGPDHGRCV 612


>DQ974173-1|ABJ52813.1|  553|Anopheles gambiae serpin 16 protein.
          Length = 553

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 102 VYREKRAWQEQYRTNPRQPESASLEHMLGSLRADMSRQGVQTPQKGCC 149
           V  +  A ++ +R NP       L  ++GS+    S+  V +P    C
Sbjct: 60  VVSQPPATRDTFRYNPASAAVTELARLIGSILGQQSKAAVFSPVSIAC 107


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 207 RCAYCNGPILDKCVTALEK--TWHTEH--FFCAQCGQQFGEEGFHERDGKPYCRADYFDM 262
           RC YC  P     +  LE     HT+   + C QC Q F ++   +R    Y   DY   
Sbjct: 356 RCEYC--PYASISMRHLESHLLLHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPDYVAP 413

Query: 263 FAPK-----CGGCNKPIMENYISALNTQWH-PDCFVCKDCQNPVKGK 303
             PK     C  C +P         +   H P+  V K+ +   +G+
Sbjct: 414 -TPKAKTHICPTCKRPFRHKGNLIRHMAMHDPESTVSKEMEALREGR 459


>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 239 QQFGEEGFHERDG-KPYCRADYFDMFAPKCGG 269
           Q+   +GF+     KPYC+ D  D F   C G
Sbjct: 440 QRLSGDGFNAWSVYKPYCQRDAVDTFVRGCFG 471


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 92  SGTGG-DS-GTHVYREKRAWQEQYRTNPRQPE 121
           SG GG DS G  V   K+  Q+Q R++P+ PE
Sbjct: 291 SGDGGRDSRGGGVDAAKKQHQQQQRSSPQPPE 322


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 171 EHFTCA-HCNQELGTRNFFERDGRPYCEPDY 200
           +H  C  HC +    RN + RD    C P Y
Sbjct: 84  DHLACTKHCVEGCFCRNGYVRDKYDRCIPSY 114


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 79  LDDLMASLSDFKVSGTGGDSGTHVYREKRAWQEQYRTNPRQPESASLEHMLGSLRADMSR 138
           L  + +S  +         SGTH  R      +Q +   RQP+    + ++G+ +    R
Sbjct: 41  LSSISSSSRNSSSCNNSSSSGTHSDRPVAGMLQQQQQQQRQPQR---QAVVGTQQQQQRR 97

Query: 139 QGVQTPQK 146
           Q  Q  Q+
Sbjct: 98  QQQQHQQR 105


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,541
Number of Sequences: 2123
Number of extensions: 15730
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 9
length of query: 324
length of database: 516,269
effective HSP length: 64
effective length of query: 260
effective length of database: 380,397
effective search space: 98903220
effective search space used: 98903220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)