GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002787-TA|BGIBMGA002787-PA|undefined
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   2.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     19   6.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          19   6.8  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 27  PGYGRTGGRGNXXXXXXXXXXXXXARYGNYAEKTSF 62
           P YGRT    N              + G Y +++ F
Sbjct: 332 PTYGRTFTLSNTAKFGVHAPASGGGKEGTYTKESGF 367


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 4    HKYTSTVQSNYSTHTPGYNVGQSPG 28
            H  TS    N +T+    N G +PG
Sbjct: 1010 HSATSNSSVNANTNNIPTNAGTTPG 1034


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 5   KYTSTVQSNYSTHTPGYNVGQSPG 28
           +Y  T Q+NY ++ P Y+  +  G
Sbjct: 366 EYKGT-QTNYPSYEPTYDNSRREG 388


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 12  SNYSTHTPGYNVGQSPGYGRTGGR 35
           SNY+ +  G++     G    GG+
Sbjct: 242 SNYNNYQEGFSCQYYQGKNCVGGK 265


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.124    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,150
Number of Sequences: 317
Number of extensions: 478
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.4 bits)
S2: 35 (18.2 bits)