GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002787-TA|BGIBMGA002787-PA|undefined
         (72 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   0.53 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   1.6  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   2.8  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    23   3.7  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    23   6.5  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVG 24
           +P   T +  S+YST TP +++G
Sbjct: 535 SPSSSTKSASSSYSTTTPAFSIG 557


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 2   TPHKYTSTVQSNYSTHTPGY 21
           TP  Y+  + +NY + TPG+
Sbjct: 309 TPSLYSQRLSNNYDSTTPGF 328


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 16  THTPGYNVGQSPGYGRTGGRG 36
           T+ PG + G+  G GR  GRG
Sbjct: 132 TNVPGMSRGRGRGRGRGRGRG 152


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 4   HKYTST-VQSNYSTHTPGYNVGQSPGYG 30
           H +  T  Q+N+  HT   N+G   G G
Sbjct: 227 HTFQQTNPQNNFHRHTNSMNIGNDNGMG 254


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
          Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 52 RYGNYAEKTSFTERSDNNMA 71
          R+ N+A K  F  R+ NN A
Sbjct: 44 RFSNFASKQCFPLRNGNNSA 63


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.124    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,446
Number of Sequences: 5004
Number of extensions: 8380
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 45 (22.2 bits)