Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002787-TA|BGIBMGA002787-PA|undefined
(72 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0243 - 16124790-16125361,16126358-16126547 29 0.61
06_03_1506 + 30641428-30642168 27 1.4
12_02_0064 + 13104835-13105311,13107731-13108119,13108156-131082... 25 5.6
10_08_0220 - 15977247-15977804 25 5.6
10_08_0217 - 15962192-15962884 25 5.6
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806... 25 5.6
06_02_0120 + 12055076-12055175,12055322-12055725 25 5.6
04_03_0062 - 10581175-10581879 25 5.6
04_01_0620 - 8151065-8151791,8152246-8152418 25 5.6
10_08_0238 - 16093780-16094355 25 7.5
10_08_0221 - 15980370-15980927 25 7.5
10_08_0218 - 15967064-15967906 25 7.5
06_01_0760 - 5676973-5677830 25 7.5
06_01_0690 + 5033943-5034740 25 7.5
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421... 25 7.5
02_04_0491 + 23417790-23417859,23418550-23418773,23418951-234189... 25 7.5
>10_08_0243 - 16124790-16125361,16126358-16126547
Length = 253
Score = 28.7 bits (61), Expect = 0.61
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 13 NYSTHTPGYNVGQSPGYGRTGGRGNXXXXXXXXXXXXXARYGNY 56
NY H G G+ GY + GG G+ + G Y
Sbjct: 125 NYGAHASGGGGGEGGGYSQYGGSGSGSGSGSGSGSSEYTQNGGY 168
>06_03_1506 + 30641428-30642168
Length = 246
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 13 NYSTHTPGYNVGQSPGYGRTGGRGN 37
+Y+ T GY G GYG GG G+
Sbjct: 222 SYNGGTGGYGEGHGSGYGGGGGHGH 246
>12_02_0064 +
13104835-13105311,13107731-13108119,13108156-13108286,
13108378-13108469,13108488-13109264,13109291-13109320
Length = 631
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 18 TPGYNVGQSPGYGRTGGRGN 37
TPGY SPG+ TG N
Sbjct: 449 TPGYTPTPSPGHNETGVESN 468
>10_08_0220 - 15977247-15977804
Length = 185
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 84 GYGSGSGSGYGQAGGSG 100
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 125 GYGSGSGSGYGQAGGYG 141
>10_08_0217 - 15962192-15962884
Length = 230
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 20 GYNVGQSPGYGRTGGRGN 37
GY G GYG+ GG G+
Sbjct: 87 GYGSGSGSGYGQAGGYGS 104
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 128 GYGSGSGSGYGQAGGYG 144
>10_05_0019 -
8049145-8049334,8059808-8060618,8060708-8060783,
8060856-8061008
Length = 409
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 18 TPGYNVGQSPGYGRTGGRGN 37
TPGY SPG+ TG N
Sbjct: 199 TPGYTPTPSPGHNETGVESN 218
>06_02_0120 + 12055076-12055175,12055322-12055725
Length = 167
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 19 PGYNVGQSPGYGRTGGRG 36
PGY G PGYG GG G
Sbjct: 86 PGYGSGYGPGYG-GGGSG 102
>04_03_0062 - 10581175-10581879
Length = 234
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 18 TPGYNVGQSPGYGRTGGRGN 37
TPGY SPG+ TG N
Sbjct: 109 TPGYTPTPSPGHNETGVESN 128
>04_01_0620 - 8151065-8151791,8152246-8152418
Length = 299
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 18 TPGYNVGQSPGYGRTGGRGN 37
TPGY SPG+ TG N
Sbjct: 109 TPGYTPTPSPGHNETGVESN 128
>10_08_0238 - 16093780-16094355
Length = 191
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 12 SNYSTHTPGYNVGQSPGYGRTGGRGNXXXXXXXXXXXXXARYGNY 56
++Y H G G GY + GG G+ ++ G Y
Sbjct: 62 NSYGAHASGGGGGGGGGYSQYGGSGSGSGYGTGSGSSQTSQNGYY 106
>10_08_0221 - 15980370-15980927
Length = 185
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 84 GYGSGSGSGYGQAGGYG 100
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 125 GYGSGSGSGYGQAGGYG 141
>10_08_0218 - 15967064-15967906
Length = 280
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 88 GYGSGSGSGYGQAGGYG 104
>06_01_0760 - 5676973-5677830
Length = 285
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 87 GYGSGSGSGYGQAGGYG 103
>06_01_0690 + 5033943-5034740
Length = 265
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 86 GYGSGSGSGYGQAGGYG 102
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 126 GYGSGSGSGYGQAGGYG 142
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 20 GYNVGQSPGYGRTGGRG 36
GY G GYG+ GG G
Sbjct: 207 GYGSGSGSGYGQAGGYG 223
>03_04_0091 +
17241555-17241602,17241685-17241822,17241901-17242198,
17242281-17242513,17242632-17242827,17242911-17243032,
17243100-17243165,17243373-17243436,17243851-17244176
Length = 496
Score = 25.0 bits (52), Expect = 7.5
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 5 KYTSTVQSNYSTHTPGYNVGQSPGYGR-TGGRGNXXXXXXXXXXXXXARYGNYAEKTSFT 63
K T+T N T G N G + G GR GRG A GNY +F+
Sbjct: 383 KRTTTRVVNGVVITRGDN-GNAGGGGRYQSGRGGYRGDNFRGRGGGYANSGNYRGGDNFS 441
Query: 64 ERSD 67
R+D
Sbjct: 442 RRND 445
>02_04_0491 +
23417790-23417859,23418550-23418773,23418951-23418964,
23419842-23419968,23420092-23420161,23420661-23420766,
23420849-23420966,23421457-23421576,23421679-23421859,
23421954-23422030,23422117-23422169,23422336-23422387,
23422683-23423885
Length = 804
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 16 THTPGYNVGQSPGYGRTGGRGN 37
T T GY G S G G GG N
Sbjct: 489 TTTTGYEAGSSTGPGSGGGSAN 510
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.306 0.124 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,583
Number of Sequences: 37544
Number of extensions: 58965
Number of successful extensions: 126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 33
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 51 (24.6 bits)
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