GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002787-TA|BGIBMGA002787-PA|undefined
         (72 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021209-1|AAH21209.1|  966|Homo sapiens RAI1 protein protein.         30   1.3  
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1...    30   1.3  
AJ271791-1|CAC20424.1| 1800|Homo sapiens retinoid-acid induced p...    30   1.3  
AJ271790-1|CAC20423.1| 1862|Homo sapiens retinoid-acid induced p...    30   1.3  
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.     30   1.3  

>BC021209-1|AAH21209.1|  966|Homo sapiens RAI1 protein protein.
          Length = 966

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 32
           TP +Y  T   + S+H+P  +VG+SP Y  T
Sbjct: 330 TPEQYYQTFSPS-SSHSPARSVGRSPSYSST 359


>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
           protein.
          Length = 1906

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 32
           TP +Y  T   + S+H+P  +VG+SP Y  T
Sbjct: 330 TPEQYYQTFSPS-SSHSPARSVGRSPSYSST 359


>AJ271791-1|CAC20424.1| 1800|Homo sapiens retinoid-acid induced
           protein 1 protein.
          Length = 1800

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 32
           TP +Y  T   + S+H+P  +VG+SP Y  T
Sbjct: 308 TPEQYYQTFSPS-SSHSPARSVGRSPSYSST 337


>AJ271790-1|CAC20423.1| 1862|Homo sapiens retinoid-acid induced
           protein 1 protein.
          Length = 1862

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 32
           TP +Y  T   + S+H+P  +VG+SP Y  T
Sbjct: 308 TPEQYYQTFSPS-SSHSPARSVGRSPSYSST 337


>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
          Length = 1644

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 2   TPHKYTSTVQSNYSTHTPGYNVGQSPGYGRT 32
           TP +Y  T   + S+H+P  +VG+SP Y  T
Sbjct: 334 TPEQYYQTFSPS-SSHSPARSVGRSPSYSST 363


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.306    0.124    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,544,457
Number of Sequences: 224733
Number of extensions: 288483
Number of successful extensions: 295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 5
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 57 (27.1 bits)