GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002787-TA|BGIBMGA002787-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.49 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   2.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   7.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   7.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    19   7.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 0.49
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 3   PHKYTSTVQSNYSTHTPGYNVGQSPGY 29
           P ++   VQ+ Y  H PG+     P Y
Sbjct: 199 PQQHGLGVQNGYGRHLPGHAQMGRPSY 225



 Score = 18.6 bits (36), Expect = 7.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 15  STHTPGYNVGQSPGYGR 31
           S H   + +G   GYGR
Sbjct: 196 SQHPQQHGLGVQNGYGR 212


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 15   STHTPGYNVGQSPGYGRTGG 34
            S+  P YN     G G  GG
Sbjct: 1050 SSSNPSYNFSSVSGDGEEGG 1069


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 15   STHTPGYNVGQSPGYGRTGG 34
            S+  P YN     G G  GG
Sbjct: 1046 SSSNPSYNFSSVSGDGEEGG 1065


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 4  HKYTSTVQSNYSTHTPGY 21
          HK  S++ +NY+ +   Y
Sbjct: 79 HKIISSLSNNYNYNNNNY 96


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 4  HKYTSTVQSNYSTHTPGY 21
          HK  S++ +NY+ +   Y
Sbjct: 79 HKIISSLSNNYNYNNNNY 96


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 4  HKYTSTVQSNYSTHTPGY 21
          HK  S++ +NY+ +   Y
Sbjct: 79 HKIISSLSNNYNYNNNNY 96


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 24 GQSPGYGRTGGRG 36
          G+  G+G+ G RG
Sbjct: 81 GKGRGHGKGGSRG 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.124    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,782
Number of Sequences: 429
Number of extensions: 692
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (18.9 bits)
S2: 36 (18.6 bits)