Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002786-TA|BGIBMGA002786-PA|IPR013032|EGF-like region,
IPR002130|Peptidyl-prolyl cis-trans isomerase, cyclophilin type,
IPR003613|U box
         (515 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   6.1  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 386 CKQLDGKHTIFGKLVGGLDTLN 407
           C  L+GK  +F + +GG+++ N
Sbjct: 28  CLLLNGKXDLFARCMGGINSRN 49


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 177 HHIKHNLRVETEEEIALKKDPHARLKTVSAETKDILQELEKDY 219
           HH+ H+  +  +    + ++P    +        IL+EL+ DY
Sbjct: 74  HHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILRELQTDY 116


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,998
Number of Sequences: 429
Number of extensions: 5887
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 515
length of database: 140,377
effective HSP length: 61
effective length of query: 454
effective length of database: 114,208
effective search space: 51850432
effective search space used: 51850432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)