GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002786-TA|BGIBMGA002786-PA|IPR013032|EGF-like region,
IPR002130|Peptidyl-prolyl cis-trans isomerase, cyclophilin type,
IPR003613|U box
         (515 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    26   0.55 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   5.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   5.1  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 26.2 bits (55), Expect = 0.55
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 132 EAVEQLNIKGKNWKDLVDD---TPFAAR-NDIITIQDPQNLA-KFNISNFHHIKHNL--R 184
           E VE  N  G  W  + DD   TP+  + N  +   +P+++A K   +   ++   +   
Sbjct: 305 EIVEAQNAGG--WTTVWDDEQKTPYMYKGNQWVGYDNPKSIAIKVQYAKSLNLAGVMIWS 362

Query: 185 VETEEEIALKKDPHARLKTVSAETKDILQELEKD-YKAPEKKEDQKESADKFNAAHYSTG 243
           +ET++   L    +  L  ++A  K    E+  +    PE +  Q   ++   A+   T 
Sbjct: 363 IETDDFNGLSGTKYQILNAINAALKS--DEIPPEPVPTPEPQPTQTTESEPTQASEQPTE 420

Query: 244 KVAASFTSTAMVPETTHEAAIICEDEVI 271
                   T   PE+ +E+  +C  E I
Sbjct: 421 SSTTQKPQTTKTPESGNESDGVCTKEGI 448


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 460 PGVRPKKATQPLKVFREGVGKYLNL 484
           PG R  + T P K++  GV  ++ L
Sbjct: 20  PGFRKNRTTCPEKIYAYGVVAFITL 44


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 460 PGVRPKKATQPLKVFREGVGKYLNL 484
           PG R  + T P K++  GV  ++ L
Sbjct: 20  PGFRKNRTTCPEKIYAYGVVAFITL 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,322
Number of Sequences: 317
Number of extensions: 5181
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 515
length of database: 114,650
effective HSP length: 60
effective length of query: 455
effective length of database: 95,630
effective search space: 43511650
effective search space used: 43511650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)