GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002786-TA|BGIBMGA002786-PA|IPR013032|EGF-like region,
IPR002130|Peptidyl-prolyl cis-trans isomerase, cyclophilin type,
IPR003613|U box
         (515 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    27   0.91 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   1.2  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   6.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   8.5  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   8.5  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 380 FITFRSCKQLDGKHTIFGKLVGGLDTLNAMESIEVDNKDRPIQDIVIEAA 429
           F  +R  + L G  +  G ++  L   NA ESIE+ ++DR ++ I +  A
Sbjct: 130 FSVYRCDRSLSGSSSRGGGVL--LAVSNAYESIELPSRDRSLEYICVRVA 177


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 186 ETEEEIALK-KDPHARLKTVSAETKDILQELEKDYKAPEKKEDQKESADKFNAAHYSTGK 244
           ET+ + + K KD  A++       +  L+  E+D K  +KK ++     K +   + T K
Sbjct: 762 ETQTQCSAKVKDLQAKIADGKGHRERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLK 821

Query: 245 VAASFTSTAMVPETTHEAAIICEDEV 270
           +        +V  T  E A+  E+++
Sbjct: 822 LEIEELQKGIV--TAKEQAVKLEEQI 845


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 32  EEDTTFKRLPFDHCCLCLQPFDDPYCDADGNVFELQAIIDFRKKFKINPVTGKKLDIKTL 91
           +ED   +R+   H        D  Y D + ++F   A ++ + K +    +     +KTL
Sbjct: 240 DEDQCARRMAMKHIQANKDDIDPDYYDLETHIFFDDAFVNDKSKCESADASPLNSYVKTL 299

Query: 92  IKLNFFKNAEDAYHCPVLFKPFTK 115
           I  +  + A + Y   +   P TK
Sbjct: 300 IN-HIEEAALEVYKTKMRVYPPTK 322


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 166 QNLAKFNISNFHHIKHNLRVETEEEIALKKDPHARLKTVSAETKDILQELEK 217
           Q++ K N       +  +   T ++  ++    A L T+  ETK +L+E EK
Sbjct: 417 QDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEKEK 468


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 256 PETTHEAAIICEDEVIYERTKKKGYVRLVTNVGHLNFELYCDV 298
           PE T    + C D + ++ +   G  + +T +  L+ E YC +
Sbjct: 68  PENTVRLRLQCNDGLFFQSSLSPGSFKQLTKLHALSIE-YCKI 109


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,561
Number of Sequences: 2123
Number of extensions: 21790
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 7
length of query: 515
length of database: 516,269
effective HSP length: 67
effective length of query: 448
effective length of database: 374,028
effective search space: 167564544
effective search space used: 167564544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)