GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002785-TA|BGIBMGA002785-PA|IPR003533|Doublecortin,
IPR001680|WD-40 repeat, IPR011046|WD40-like, IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (717 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    27   0.34 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    26   0.78 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   1.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   3.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   4.2  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 233 GSYVLAVDAGRESILSVWQWQWGHLLGKVATL--QEELTGAAFHPLDDNLLITHGKGHLA 290
           G +V    A R SI+ +++W+W  +  +       +   G    P ++NL++T    +  
Sbjct: 16  GLFVPHFAADRNSIVHLFEWKWSDIADECERFLAPKGFGGVQISPPNENLVVT--SSNRP 73

Query: 291 FWNR 294
           +W R
Sbjct: 74  WWER 77


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 241 AGRESILSVWQWQWGHLLGKVATL--QEELTGAAFHPLDDNLLITHGKGHLAFWNR 294
           A R SI+ +++W+W  +  +       +   G    P ++NL++T    +  +W R
Sbjct: 25  ADRNSIVHLFEWKWSDIADECERFLAPKGFGGVQISPPNENLVVT--SSNRPWWER 78


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 241 AGRESILSVWQWQWGHLLGKVATL--QEELTGAAFHPLDDNLLITHGKGHLAFWNR 294
           A R SI+ +++W+W  +          +   G    P ++NL++T    +  +W R
Sbjct: 25  ADRNSIVHLFEWKWSDIADVCERFLAPKGFGGVQISPPNENLVVT--SSNRPWWER 78


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 384 SLQNYKRITETKLPETAG--GIRSIYPQRPGRNDGN 417
           +L NY+++ E + P TA   G+  I  + P   D N
Sbjct: 18  TLNNYQQVMEPRSPHTAWQFGVSQIVKREPMDEDKN 53


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 511 NADAGAHVATLRVCGSPLNCLQYNTAGDFLAIGSQNGSIYLFRVSRDG 558
           + D   HV +L      +N + Y+  G + ++  QN  +Y   +  +G
Sbjct: 189 SVDLSYHVPSLSKYLDFINVMAYDLHGSWESVTGQNAPLYASSIDVEG 236


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,095
Number of Sequences: 317
Number of extensions: 6511
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 717
length of database: 114,650
effective HSP length: 62
effective length of query: 655
effective length of database: 94,996
effective search space: 62222380
effective search space used: 62222380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)