GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002785-TA|BGIBMGA002785-PA|IPR003533|Doublecortin,
IPR001680|WD-40 repeat, IPR011046|WD40-like, IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (717 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 43  INNMD-HSIQCRVLLNLRTTQPFEEVLEDLGQVLKMSGAKRMYTITGQEVRSFSQLRN-E 100
           +N M+ H ++C  +  L  T P   +L+ + +  K+   +++ +     ++S  +L++ E
Sbjct: 691 LNTMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKLDTNRQVNSAVKSTIQSLMKLKSPE 750

Query: 101 FADV 104
           + D+
Sbjct: 751 WKDL 754


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 264 LQEELTGAAFHPLDDNLLITHGKGHLAFWNRRKDGFFERTD 304
           L+    GA   P    L++  G G  AFW+ RK    ++TD
Sbjct: 306 LKRPSDGATSEPFPF-LMLPLGAGRPAFWSLRKAFARKKTD 345


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,207
Number of Sequences: 429
Number of extensions: 7730
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 717
length of database: 140,377
effective HSP length: 63
effective length of query: 654
effective length of database: 113,350
effective search space: 74130900
effective search space used: 74130900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)